Information for 8-TTTTATGTACAG (Motif 4)

A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T G T C A A G T C C T G A A C T G
Reverse Opposite:
A G T C A G C T A C T G A C G T C G T A A G T C C G T A A C G T C G T A C G T A C G T A C G T A
p-value:1e-20
log p-value:-4.722e+01
Information Content per bp:1.968
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif15.38%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets101.8 +/- 60.6bp
Average Position of motif in Background81.5 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)-4.1
Multiplicity (# of sites on avg that occur together)3.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TTTTATGTACAG
TTTTATGGCM--
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T G T C A A G T C C T G A A C T G
C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGTACAG
NTTTTATGAC---
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T G T C A A G T C C T G A A C T G
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATGTACAG
NNANTTTTATTGGNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T G T C A A G T C C T G A A C T G
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

NFIL3/MA0025.1/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TTTTATGTACAG-
--TTATGTAACAT
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T G T C A A G T C C T G A A C T G A C G T
A C G T A C G T C G A T A C G T C G T A A G C T C T A G A C G T C G T A C T G A A G T C T C A G G A C T

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTTTATGTACAG
TTTTATGGCB--
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T G T C A A G T C C T G A A C T G
G C A T C G A T G C A T G A C T G C T A A G C T C A T G C T A G A T G C A G T C A C G T A C G T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TTTTATGTACAG---
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T G T C A A G T C C T G A A C T G A C G T A C G T A C G T
G A C T A G C T A G C T G A C T G A C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G G C A T C G A T

PB0015.1_Foxa2_1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TTTTATGTACAG---
NNNTTTGTTTACTTTTN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T G T C A A G T C C T G A A C T G A C G T A C G T A C G T
T A C G G A C T A T G C C G A T C G A T C G A T C T A G C G A T C A G T C A G T C T G A A G T C G C A T G C A T C G A T C G A T C G A T

Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTTTATGTACAG
CTTTGATGTGSB-
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T G T C A A G T C C T G A A C T G
A G T C G A C T A G C T C G A T A T C G G C T A C G A T A T C G C G A T A C T G T A C G A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TTTTATGTACAG
DGWTTTATGRCN--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T G T C A A G T C C T G A A C T G
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTATGTACAG
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C G T G T C A A G T C C T G A A C T G
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T