Information for 9-ATCAAAGTACYC (Motif 5)

C G T A C G A T A T G C C G T A C G T A C G T A A C T G A C G T C G T A A G T C G A T C G T A C
Reverse Opposite:
A C T G C T A G A C T G A C G T C G T A T G A C A C G T A C G T A C G T A T C G C G T A A C G T
p-value:1e-20
log p-value:-4.722e+01
Information Content per bp:1.812
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif15.38%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets88.4 +/- 61.3bp
Average Position of motif in Background163.4 +/- 6.3bp
Strand Bias (log2 ratio + to - strand density)3.5
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-ATCAAAGTACYC----
ACTCCAAGTACTTGGAA
 A C G T C G T A C G A T A T G C C G T A C G T A C G T A A C T G A C G T C G T A A G T C G A T C G T A C A C G T A C G T A C G T A C G T
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

Arid3a/MA0151.1/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:ATCAAAGTACYC
ATTAAA------
 C G T A C G A T A T G C C G T A C G T A C G T A A C T G A C G T C G T A A G T C G A T C G T A C
C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-ATCAAAGTACYC----
NATTTAAGTACTTANNA
 A C G T C G T A C G A T A T G C C G T A C G T A C G T A A C T G A C G T C G T A A G T C G A T C G T A C A C G T A C G T A C G T A C G T
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:4
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----ATCAAAGTACYC
NNNAGATCAAAGGANNN
 A C G T A C G T A C G T A C G T A C G T C G T A C G A T A T G C C G T A C G T A C G T A A C T G A C G T C G T A A G T C G A T C G T A C
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

PB0083.1_Tcf7_1/Jaspar

Match Rank:5
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----ATCAAAGTACYC
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T A C G T A C G T C G T A C G A T A T G C C G T A C G T A C G T A A C T G A C G T C G T A A G T C G A T C G T A C
A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----ATCAAAGTACYC
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T A C G T A C G T C G T A C G A T A T G C C G T A C G T A C G T A A C T G A C G T C G T A A G T C G A T C G T A C
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

PB0040.1_Lef1_1/Jaspar

Match Rank:7
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----ATCAAAGTACYC
NANAGATCAAAGGGNNN
 A C G T A C G T A C G T A C G T A C G T C G T A C G A T A T G C C G T A C G T A C G T A A C T G A C G T C G T A A G T C G A T C G T A C
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

PH0116.1_Nkx2-9/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ATCAAAGTACYC----
NATTTAAGTACTTNAAA
 A C G T C G T A C G A T A T G C C G T A C G T A C G T A A C T G A C G T C G T A A G T C G A T C G T A C A C G T A C G T A C G T A C G T
C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A

PROP1/MA0715.1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ATCAAAGTACYC
TAATTTAATTA---
 A C G T A C G T C G T A C G A T A T G C C G T A C G T A C G T A A C T G A C G T C G T A A G T C G A T C G T A C
G C A T C G T A C T G A G C A T G A C T C G A T G T C A C T G A C G A T G A C T C G T A A C G T A C G T A C G T

LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ATCAAAGTACYC
ASATCAAAGG----
 A C G T A C G T C G T A C G A T A T G C C G T A C G T A C G T A A C T G A C G T C G T A A G T C G A T C G T A C
C T G A A T C G G C T A G C A T T A G C C G T A T C G A C T G A T C A G T A C G A C G T A C G T A C G T A C G T