Information for 11-AAAGAATTGA (Motif 8)

C G T A G T C A C G T A A C T G C G T A C T G A A C G T C G A T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A C G T A A G C T A C G T A G T C A C G T C A G T A C G T
p-value:1e-11
log p-value:-2.592e+01
Information Content per bp:1.898
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif25.64%
Number of Background Sequences with motif323.2
Percentage of Background Sequences with motif1.01%
Average Position of motif in Targets120.4 +/- 59.2bp
Average Position of motif in Background99.8 +/- 97.1bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0066.1_Sox17_1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AAAGAATTGA---
ATAAACAATTAAACA
 A C G T A C G T C G T A G T C A C G T A A C T G C G T A C T G A A C G T C G A T A C T G C G T A A C G T A C G T A C G T
T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

PB0068.1_Sox1_1/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----AAAGAATTGA--
NNNTATTGAATTGNNN
 A C G T A C G T A C G T A C G T C G T A G T C A C G T A A C T G C G T A C T G A A C G T C G A T A C T G C G T A A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

PB0074.1_Sox8_1/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----AAAGAATTGA---
TNNAGAACAATANATNN
 A C G T A C G T A C G T A C G T C G T A G T C A C G T A A C T G C G T A C T G A A C G T C G A T A C T G C G T A A C G T A C G T A C G T
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:4
Score:0.63
Offset:4
Orientation:forward strand
Alignment:AAAGAATTGA--
----TATTGAYY
 C G T A G T C A C G T A A C T G C G T A C T G A A C G T C G A T A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C G T A C G A T G A C T A C T G C T G A G A C T G A T C

PB0173.1_Sox21_2/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----AAAGAATTGA--
NNNNNGAACAATTGANN
 A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A A C T G C G T A C T G A A C G T C G A T A C T G C G T A A C G T A C G T
A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

PB0065.1_Sox15_1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----AAAGAATTGA---
TAGTGAACAATAGATTT
 A C G T A C G T A C G T A C G T C G T A G T C A C G T A A C T G C G T A C T G A A C G T C G A T A C T G C G T A A C G T A C G T A C G T
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

PB0073.1_Sox7_1/Jaspar

Match Rank:7
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------AAAGAATTGA------
AATAAAGAACAATAGAATTTCA
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A A C T G C G T A C T G A A C G T C G A T A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AAAGAATTGA---
-CGGAAGTGAAAC
 C G T A G T C A C G T A A C T G C G T A C T G A A C G T C G A T A C T G C G T A A C G T A C G T A C G T
A C G T T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C

PB0067.1_Sox18_1/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----AAAGAATTGA-
NNTNANAACAATTNNA
 A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A A C T G C G T A C T G A A C G T C G A T A C T G C G T A A C G T
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

PB0175.1_Sox4_2/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AAAGAATTGA------
GGAAAAATTGTTAGGAA
 A C G T C G T A G T C A C G T A A C T G C G T A C T G A A C G T C G A T A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A