Information for 23-GAAGCATTCTCA (Motif 19)

C T A G C G T A C G T A A C T G A G T C C G T A A C G T A C G T A T G C A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A T C G C G T A C G T A A C G T A C T G A G T C C G A T A C G T A G T C
p-value:1e-7
log p-value:-1.810e+01
Information Content per bp:1.919
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif8.11%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets105.8 +/- 61.4bp
Average Position of motif in Background81.8 +/- 55.6bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GAAGCATTCTCA
--CTCATTGTC-
 C T A G C G T A C G T A A C T G A G T C C G T A A C G T A C G T A T G C A C G T A G T C C G T A
A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GAAGCATTCTCA-----
--AGTATTCTCGGTTGC
 C T A G C G T A C G T A A C T G A G T C C G T A A C G T A C G T A T G C A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C A G T A C G A G C T G C T A G A C T C A G T G A T C A G C T G A T C T C A G T C A G C G A T G A C T C A T G A T G C

SOX13/MA1120.1/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GAAGCATTCTCA
-NNCCATTGTNN
 C T A G C G T A C G T A A C T G A G T C C G T A A C G T A C G T A T G C A C G T A G T C C G T A
A C G T C G A T A C T G A G T C G A T C C G T A G A C T C G A T T C A G G A C T A G C T G A C T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GAAGCATTCTCA-
---CCWTTGTYYB
 C T A G C G T A C G T A A C T G A G T C C G T A A C G T A C G T A T G C A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GAAGCATTCTCA--
----HTTTCCCASG
 C T A G C G T A C G T A A C T G A G T C C G T A A C G T A C G T A T G C A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GAAGCATTCTCA
AGGVNCCTTTGT--
 A C G T A C G T C T A G C G T A C G T A A C T G A G T C C G T A A C G T A C G T A T G C A C G T A G T C C G T A
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAAGCATTCTCA----
GGAAAAATTGTTAGGAA
 A C G T C T A G C G T A C G T A A C T G A G T C C G T A A C G T A C G T A T G C A C G T A G T C C G T A A C G T A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

POL008.1_DCE_S_I/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GAAGCATTCTCA
NGAAGC-------
 A C G T C T A G C G T A C G T A A C T G A G T C C G T A A C G T A C G T A T G C A C G T A G T C C G T A
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RBPJ/MA1116.1/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GAAGCATTCTCA--
----NNTTCCCANN
 C T A G C G T A C G T A A C T G A G T C C G T A A C G T A C G T A T G C A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A C G T C A G T G C A T T G A C T G A C A G T C C T G A A T C G T C A G

PB0137.1_Irf3_2/Jaspar

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GAAGCATTCTCA
NNGCACCTTTCTCC
 A C G T A C G T C T A G C G T A C G T A A C T G A G T C C G T A A C G T A C G T A T G C A C G T A G T C C G T A
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C