Information for 9-CTGTACATAAAA (Motif 2)

G T A C A G C T A C T G A G C T C G T A A G T C C G T A A C G T C T G A C G T A C G T A C G T A
Reverse Opposite:
A C G T A C G T A C G T A G C T C G T A A C G T A C T G A C G T C T G A A G T C C T G A A C T G
p-value:1e-16
log p-value:-3.903e+01
Information Content per bp:1.954
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif13.51%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets95.0 +/- 61.5bp
Average Position of motif in Background56.6 +/- 15.3bp
Strand Bias (log2 ratio + to - strand density)2.5
Multiplicity (# of sites on avg that occur together)2.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CTGTACATAAAA
--KGCCATAAAA
 G T A C A G C T A C T G A G C T C G T A A G T C C G T A A C G T C T G A C G T A C G T A C G T A
A C G T A C G T C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

NFIL3/MA0025.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTGTACATAAAA
ANGTTACATAA--
 A C G T G T A C A G C T A C T G A G C T C G T A A G T C C G T A A C G T C T G A C G T A C G T A C G T A
C G T A A G C T T C A G A G C T A C G T C G T A A G T C C T G A C G A T G T C A C G T A A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTGTACATAAAA----
CTACCAATAAAATTCT
 G T A C A G C T A C T G A G C T C G T A A G T C C G T A A C G T C T G A C G T A C G T A C G T A A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PB0015.1_Foxa2_1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CTGTACATAAAA--
AAAAAGTAAACAAAGAC
 A C G T A C G T A C G T G T A C A G C T A C T G A G C T C G T A A G T C C G T A A C G T C T G A C G T A C G T A C G T A A C G T A C G T
G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C

Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGTACATAAAA-
-VSCACATCAAAG
 G T A C A G C T A C T G A G C T C G T A A G T C C G T A A C G T C T G A C G T A C G T A C G T A A C G T
A C G T T G C A A T G C T G A C C G T A A T G C C G T A C G A T T A G C C G T A C T G A C T G A T C A G

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTGTACATAAAA------
-TATAGATCAAAGGAAAA
 G T A C A G C T A C T G A G C T C G T A A G T C C G T A A C G T C T G A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTGTACATAAAA
--VGCCATAAAA
 G T A C A G C T A C T G A G C T C G T A A G T C C G T A A C G T C T G A C G T A C G T A C G T A
A C G T A C G T T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CTGTACATAAAA-
---GTCATAAAAN
 G T A C A G C T A C T G A G C T C G T A A G T C C G T A A C G T C T G A C G T A C G T A C G T A A C G T
A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PH0056.1_Hoxa9/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTGTACATAAAA-----
ACGGCCATAAAATTAAT
 G T A C A G C T A C T G A G C T C G T A A G T C C G T A A C G T C T G A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CTGTACATAAAA-----
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C G T G T A C A G C T A C T G A G C T C G T A A G T C C G T A A C G T C T G A C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A