Information for 10-ATCACCTAGGTG (Motif 3)

C G T A A C G T T A G C C G T A G A T C A G T C A G C T T C G A A C T G C A T G A C G T A C T G
Reverse Opposite:
T A G C C G T A G A T C A G T C A G C T T C G A A C T G C A T G A C G T A C T G C G T A A C G T
p-value:1e-16
log p-value:-3.903e+01
Information Content per bp:1.818
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif13.51%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets113.3 +/- 63.3bp
Average Position of motif in Background164.2 +/- 19.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:ATCACCTAGGTG
-TGACCTARTT-
 C G T A A C G T T A G C C G T A G A T C A G T C A G C T T C G A A C T G C A T G A C G T A C T G
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:ATCACCTAGGTG
-TGACCTARTT-
 C G T A A C G T T A G C C G T A G A T C A G T C A G C T T C G A A C T G C A T G A C G T A C T G
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T

RORB/MA1150.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ATCACCTAGGTG
NTGACCTAATT-
 C G T A A C G T T A G C C G T A G A T C A G T C A G C T T C G A A C T G C A T G A C G T A C T G
C T A G G A C T C T A G T C G A G A T C T G A C G A C T T G C A G C T A C G A T G C A T A C G T

NR1H4/MA1110.1/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ATCACCTAGGTG
TCAATGACCTA----
 A C G T A C G T A C G T C G T A A C G T T A G C C G T A G A T C A G T C A G C T T C G A A C T G C A T G A C G T A C T G
A C G T A G T C C G T A C T G A A G C T C T A G G T C A G T A C G T A C A G C T G C T A A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ATCACCTAGGTG
-TGACCTTGAT-
 C G T A A C G T T A G C C G T A G A T C A G T C A G C T T C G A A C T G C A T G A C G T A C T G
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---ATCACCTAGGTG
NNHYTGACCTAGWTT
 A C G T A C G T A C G T C G T A A C G T T A G C C G T A G A T C A G T C A G C T T C G A A C T G C A T G A C G T A C T G
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATCACCTAGGTG
BTGACCTAVTTW
 C G T A A C G T T A G C C G T A G A T C A G T C A G C T T C G A A C T G C A T G A C G T A C T G
A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ATCACCTAGGTG
-TGACCT-----
 C G T A A C G T T A G C C G T A G A T C A G T C A G C T T C G A A C T G C A T G A C G T A C T G
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T

RORC/MA1151.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ATCACCTAGGTG-
-TGACCTANTTAN
 C G T A A C G T T A G C C G T A G A T C A G T C A G C T T C G A A C T G C A T G A C G T A C T G A C G T
A C G T G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----ATCACCTAGGTG-
NNNNATGACCTTGANTN
 A C G T A C G T A C G T A C G T C G T A A C G T T A G C C G T A G A T C A G T C A G C T T C G A A C T G C A T G A C G T A C T G A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A