Information for 1-TGGCAMCCCT (Motif 2)

C A G T C T A G A T C G A G T C C G T A T G A C G T A C A T G C A G T C A G C T
Reverse Opposite:
C T G A T C A G T A C G A C T G A C T G C G A T T C A G A T G C G A T C G T C A
p-value:1e-18
log p-value:-4.166e+01
Information Content per bp:1.683
Number of Target Sequences with motif134.0
Percentage of Target Sequences with motif8.29%
Number of Background Sequences with motif1738.7
Percentage of Background Sequences with motif3.56%
Average Position of motif in Targets100.2 +/- 57.7bp
Average Position of motif in Background99.1 +/- 61.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----TGGCAMCCCT--
ACTATGCCAACCTACC
 A C G T A C G T A C G T A C G T C A G T C T A G A T C G A G T C C G T A T G A C G T A C A T G C A G T C A G C T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

PB0156.1_Plagl1_2/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAMCCCT----
NNNNGGTACCCCCCANN
 A C G T A C G T A C G T C A G T C T A G A T C G A G T C C G T A T G A C G T A C A T G C A G T C A G C T A C G T A C G T A C G T A C G T
G C T A C T G A C T A G C A T G C A T G C A T G G A C T C G T A A G T C T A G C A G T C A G T C G A T C G A T C C G T A T A C G G A T C

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TGGCAMCCCT
ATGCCAACC--
 A C G T C A G T C T A G A T C G A G T C C G T A T G A C G T A C A T G C A G T C A G C T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TGGCAMCCCT
TGCCAGCB--
 C A G T C T A G A T C G A G T C C G T A T G A C G T A C A T G C A G T C A G C T
G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:5
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TGGCAMCCCT
TACCATAGCAACGGT
 A C G T A C G T A C G T A C G T A C G T C A G T C T A G A T C G A G T C C G T A T G A C G T A C A T G C A G T C A G C T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TGGCAMCCCT
CCGCATAGCAACGGA
 A C G T A C G T A C G T A C G T A C G T C A G T C T A G A T C G A G T C C G T A T G A C G T A C A T G C A G T C A G C T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TGGCAMCCCT
SCCTAGCAACAG-
 A C G T A C G T A C G T C A G T C T A G A T C G A G T C C G T A T G A C G T A C A T G C A G T C A G C T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:8
Score:0.61
Offset:-9
Orientation:forward strand
Alignment:---------TGGCAMCCCT----
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T C T A G A T C G A G T C C G T A T G A C G T A C A T G C A G T C A G C T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAMCCCT
CTTGGCAA----
 A C G T A C G T C A G T C T A G A T C G A G T C C G T A T G A C G T A C A T G C A G T C A G C T
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAMCCCT---
NNGGCCACGCCTTTN
 A C G T A C G T C A G T C T A G A T C G A G T C C G T A T G A C G T A C A T G C A G T C A G C T A C G T A C G T A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G