Information for 5-GAGTGGCA (Motif 30)

C T A G C G T A C A T G C G A T C T A G A T C G T G A C G T C A
Reverse Opposite:
C A G T A C T G T A G C G A T C G C T A G T A C G C A T G A T C
p-value:1e-8
log p-value:-1.993e+01
Information Content per bp:1.597
Number of Target Sequences with motif664.0
Percentage of Target Sequences with motif41.09%
Number of Background Sequences with motif16645.0
Percentage of Background Sequences with motif34.05%
Average Position of motif in Targets99.3 +/- 56.0bp
Average Position of motif in Background99.8 +/- 62.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGGCA--
BTGABTGACAGS
 A C G T A C G T C T A G C G T A C A T G C G A T C T A G A T C G T G A C G T C A A C G T A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PB0114.1_Egr1_2/Jaspar

Match Rank:2
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----GAGTGGCA----
TGCGGAGTGGGACTGG
 A C G T A C G T A C G T A C G T C T A G C G T A C A T G C G A T C T A G A T C G T G A C G T C A A C G T A C G T A C G T A C G T
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGGCA--
NTGATTGACAGN
 A C G T A C G T C T A G C G T A C A T G C G A T C T A G A T C G T G A C G T C A A C G T A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GAGTGGCA-
GGTTGGCAT
 C T A G C G T A C A T G C G A T C T A G A T C G T G A C G T C A A C G T
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----GAGTGGCA----
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T C T A G C G T A C A T G C G A T C T A G A T C G T G A C G T C A A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

PBX3/MA1114.1/Jaspar

Match Rank:6
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----GAGTGGCA-----
GGGTGAGTGACAGGCGG
 A C G T A C G T A C G T A C G T C T A G C G T A C A T G C G A T C T A G A T C G T G A C G T C A A C G T A C G T A C G T A C G T A C G T
T A C G A C T G A C T G C G A T T C A G C G T A A C T G C A G T T A C G C T G A T A G C C T G A A C T G T A C G A T G C T C A G A T C G

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:7
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GAGTGGCA
VGCTGGCA
 C T A G C G T A C A T G C G A T C T A G A T C G T G A C G T C A
T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A

PBX2/MA1113.1/Jaspar

Match Rank:8
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GAGTGGCA--
GTGATTGACAGG
 A C G T A C G T C T A G C G T A C A T G C G A T C T A G A T C G T G A C G T C A A C G T A C G T
T C A G C G A T C A T G C T G A A C G T C A G T A C T G C T G A A G T C C T G A A T C G T A C G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GAGTGGCA
TTRAGTGSYK
 A C G T A C G T C T A G C G T A C A T G C G A T C T A G A T C G T G A C G T C A
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGGCA
CTTGAGTGGCT
 A C G T A C G T A C G T C T A G C G T A C A T G C G A T C T A G A T C G T G A C G T C A
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T