Information for 2-TGAACAAAGCCA (Motif 4)

C A G T C T A G C T G A C G T A A G T C C G T A T G C A C T G A A C T G A G T C A G T C G T C A
Reverse Opposite:
A C G T A C T G A C T G G T A C A G C T A C G T A C G T A C T G A C G T A G C T A G T C G T C A
p-value:1e-15
log p-value:-3.499e+01
Information Content per bp:1.860
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif12.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets82.8 +/- 38.8bp
Average Position of motif in Background110.3 +/- 71.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TGAACAAAGCCA
GGAACAAAGR--
 C A G T C T A G C T G A C G T A A G T C C G T A T G C A C T G A A C T G A G T C A G T C G T C A
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T

SOX10/MA0442.2/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:TGAACAAAGCCA
AAAACAAAGAA-
 C A G T C T A G C T G A C G T A A G T C C G T A T G C A C T G A A C T G A G T C A G T C G T C A
C T G A C T G A T G C A G C T A A G T C C G T A G C T A G C T A A C T G T C G A T G C A A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TGAACAAAGCCA--
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T C A G T C T A G C T G A C G T A A G T C C G T A T G C A C T G A A C T G A G T C A G T C G T C A A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TGAACAAAGCCA
VRRACAAWGG--
 C A G T C T A G C T G A C G T A A G T C C G T A T G C A C T G A A C T G A G T C A G T C G T C A
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TGAACAAAGCCA--
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T C A G T C T A G C T G A C G T A A G T C C G T A T G C A C T G A A C T G A G T C A G T C G T C A A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGAACAAAGCCA
AAAACAAAGG--
 C A G T C T A G C T G A C G T A A G T C C G T A T G C A C T G A A C T G A G T C A G T C G T C A
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TGAACAAAGCCA
-GAACAATGGN-
 C A G T C T A G C T G A C G T A A G T C C G T A T G C A C T G A A C T G A G T C A G T C G T C A
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T

Foxj3/MA0851.1/Jaspar

Match Rank:8
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------TGAACAAAGCCA
AAAAAGTAAACAAACAC-
 A C G T A C G T A C G T A C G T A C G T A C G T C A G T C T A G C T G A C G T A A G T C C G T A T G C A C T G A A C T G A G T C A G T C G T C A
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C A C G T

PB0017.1_Foxj3_1/Jaspar

Match Rank:9
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------TGAACAAAGCCA
AAAAAGTAAACAAACAC-
 A C G T A C G T A C G T A C G T A C G T A C G T C A G T C T A G C T G A C G T A A G T C C G T A T G C A C T G A A C T G A G T C A G T C G T C A
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGAACAAAGCCA
AAAACAATGG--
 C A G T C T A G C T G A C G T A A G T C C G T A T G C A C T G A A C T G A G T C A G T C G T C A
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T