Information for 11-CTGCTCGG (Motif 40)

A G T C A C G T A C T G G T A C C A G T A T G C C A T G C T A G
Reverse Opposite:
A G T C G T A C A T C G G T C A C A T G A G T C G T C A A C T G
p-value:1e-7
log p-value:-1.616e+01
Information Content per bp:1.775
Number of Target Sequences with motif199.0
Percentage of Target Sequences with motif12.31%
Number of Background Sequences with motif4139.3
Percentage of Background Sequences with motif8.47%
Average Position of motif in Targets104.6 +/- 56.1bp
Average Position of motif in Background99.5 +/- 62.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0199.1_Zfp161_2/Jaspar

Match Rank:1
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----CTGCTCGG-
NNGCNCTGCGCGGC
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G G T A C C A G T A T G C C A T G C T A G A C G T
T C G A A G T C C A T G G A T C T G C A G A T C C A G T A C T G A G T C C T A G A T G C C T A G C T A G G T A C

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTGCTCGG
GCTGTG---
 A C G T A G T C A C G T A C T G G T A C C A G T A T G C C A T G C T A G
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTCGG
CCCCCTGCTGTG
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G G T A C C A G T A T G C C A T G C T A G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTGCTCGG----
--GCTCGGSCTC
 A G T C A C G T A C T G G T A C C A G T A T G C C A T G C T A G A C G T A C G T A C G T A C G T
A C G T A C G T C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CTGCTCGG
--GCTCCG
 A G T C A C G T A C T G G T A C C A G T A T G C C A T G C T A G
A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:6
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------CTGCTCGG
VCCTCTCTGDDY--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G G T A C C A G T A T G C C A T G C T A G
T G A C T A G C G T A C G C A T A G T C A C G T A T G C C G A T T A C G C G A T C A G T A G T C A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTGCTCGG---
-TGCCCAGNHW
 A G T C A C G T A C T G G T A C C A G T A T G C C A T G C T A G A C G T A C G T A C G T
A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CTGCTCGG-
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G G T A C C A G T A T G C C A T G C T A G A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTCGG---
TNTCCTGCTGTGNNG
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G G T A C C A G T A T G C C A T G C T A G A C G T A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

POL002.1_INR/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTCGG
NNNANTGA----
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G G T A C C A G T A T G C C A T G C T A G
T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T A C G T A C G T A C G T