Information for 5-AWCACAGAAG (Motif 12)

T G C A G C A T T A G C T C G A A G T C C T G A C A T G G C T A T C G A A C T G
Reverse Opposite:
T G A C A G C T C G A T G T A C G A C T C T A G A C G T A T C G C G T A A C G T
p-value:1e-7
log p-value:-1.755e+01
Information Content per bp:1.613
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif9.13%
Number of Background Sequences with motif995.9
Percentage of Background Sequences with motif2.00%
Average Position of motif in Targets92.8 +/- 45.3bp
Average Position of motif in Background101.7 +/- 60.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:AWCACAGAAG
--CACAGN--
 T G C A G C A T T A G C T C G A A G T C C T G A C A T G G C T A T C G A A C T G
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AWCACAGAAG----
CCACACAGCAGGAGA
 A C G T T G C A G C A T T A G C T C G A A G T C C T G A C A T G G C T A T C G A A C T G A C G T A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AWCACAGAAG----
GAGCACAGCAGGACA
 A C G T T G C A G C A T T A G C T C G A A G T C C T G A C A T G G C T A T C G A A C T G A C G T A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0050.1_Osr1_1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AWCACAGAAG-----
ATTTACAGTAGCAAAA
 A C G T T G C A G C A T T A G C T C G A A G T C C T G A C A T G G C T A T C G A A C T G A C G T A C G T A C G T A C G T A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.69
Offset:2
Orientation:forward strand
Alignment:AWCACAGAAG----
--CACAGCAGGGGG
 T G C A G C A T T A G C T C G A A G T C C T G A C A T G G C T A T C G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0051.1_Osr2_1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AWCACAGAAG-----
ATGTACAGTAGCAAAG
 A C G T T G C A G C A T T A G C T C G A A G T C C T G A C A T G G C T A T C G A A C T G A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AWCACAGAAG----
CCACACAGCAGGAGA
 A C G T T G C A G C A T T A G C T C G A A G T C C T G A C A T G G C T A T C G A A C T G A C G T A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AWCACAGAAG
AAACCACAGAN-
 A C G T A C G T T G C A G C A T T A G C T C G A A G T C C T G A C A T G G C T A T C G A A C T G
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AWCACAGAAG
AAACCACAGC--
 A C G T A C G T T G C A G C A T T A G C T C G A A G T C C T G A C A T G G C T A T C G A A C T G
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:10
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AWCACAGAAG
NWAACCACADNN-
 A C G T A C G T A C G T T G C A G C A T T A G C T C G A A G T C C T G A C A T G G C T A T C G A A C T G
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T