Information for 10-TTHTGTTGCTGG (Motif 13)

A C G T A G C T G A T C A C G T A C T G A C G T C G A T C T A G G T A C A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C T G A G T C C G T A C G T A A G T C C G T A C A T G C T G A C G T A
p-value:1e-6
log p-value:-1.602e+01
Information Content per bp:1.841
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.7 +/- 17.0bp
Average Position of motif in Background89.2 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TTHTGTTGCTGG--
--CTGTTGCTAGGS
 A C G T A G C T G A T C A C G T A C T G A C G T C G A T C T A G G T A C A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TTHTGTTGCTGG
--CTGTTCCTGG
 A C G T A G C T G A T C A C G T A C T G A C G T C G A T C T A G G T A C A C G T A C T G A C T G
A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

PB0093.1_Zfp105_1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTHTGTTGCTGG--
NTNTTGTTGTTTGTN
 A C G T A C G T A G C T G A T C A C G T A C T G A C G T C G A T C T A G G T A C A C G T A C T G A C T G A C G T A C G T
G A T C C G A T G T A C C G A T G A C T C A T G G C A T A G C T C T A G C G A T C G A T C A G T C T A G G A C T C G A T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TTHTGTTGCTGG--
----GTTAATGGCC
 A C G T A G C T G A T C A C G T A C T G A C G T C G A T C T A G G T A C A C G T A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

PB0122.1_Foxk1_2/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TTHTGTTGCTGG
NNNTGTTGTTGTTNG
 A C G T A C G T A C G T A C G T A G C T G A T C A C G T A C T G A C G T C G A T C T A G G T A C A C G T A C T G A C T G
C T G A C A T G C T A G G C A T C T A G G C A T A C G T C T A G A G C T A C G T C T A G G A C T C A G T C G A T C A T G

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TTHTGTTGCTGG------
---KGTTGCTAGGMAACA
 A C G T A G C T G A T C A C G T A C T G A C G T C G A T C T A G G T A C A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

Foxj2/MA0614.1/Jaspar

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TTHTGTTGCTGG
--TTGTTTAC--
 A C G T A G C T G A T C A C G T A C T G A C G T C G A T C T A G G T A C A C G T A C T G A C T G
A C G T A C G T C G A T A C G T C T A G A C G T C G A T A C G T C G T A A G T C A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TTHTGTTGCTGG----
-NCCGTTGCTANGNGN
 A C G T A G C T G A T C A C G T A C T G A C G T C G A T C T A G G T A C A C G T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:9
Score:0.52
Offset:-8
Orientation:forward strand
Alignment:--------TTHTGTTGCTGG
ACTYKNATTCGTGNTACTTC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G A T C A C G T A C T G A C G T C G A T C T A G G T A C A C G T A C T G A C T G
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C

PB0119.1_Foxa2_2/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--TTHTGTTGCTGG-
NCNTTTGTTATTTNN
 A C G T A C G T A C G T A G C T G A T C A C G T A C T G A C G T C G A T C T A G G T A C A C G T A C T G A C T G A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T