Information for 8-GCACATAGTTTG (Motif 9)

C T A G A G T C C G T A G T A C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C T G
Reverse Opposite:
A G T C C G T A C G T A C G T A G T A C A C G T C G T A A C G T A C T G A C G T A C T G A G T C
p-value:1e-8
log p-value:-2.003e+01
Information Content per bp:1.920
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.28%
Number of Background Sequences with motif11.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets114.0 +/- 52.9bp
Average Position of motif in Background91.1 +/- 54.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0161.1_Rxra_2/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCACATAGTTTG----
TCGCGAAGGTTGTACT
 C T A G A G T C C G T A G T A C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C T G A C G T A C G T A C G T A C G T
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCACATAGTTTG---
GCACAYAGTAGGKCY
 C T A G A G T C C G T A G T A C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C T G A C G T A C G T A C G T
C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCACATAGTTTG
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C G T C T A G A G T C C G T A G T A C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C T G
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Sox5/MA0087.1/Jaspar

Match Rank:4
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GCACATAGTTTG
----ATTGTTA-
 C T A G A G T C C G T A G T A C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C T G
A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T

SOX8/MA0868.1/Jaspar

Match Rank:5
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------GCACATAGTTTG
AACACTGCACATTGTT--
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C C G T A G T A C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C T G
C T G A C G T A A G T C G T C A G T A C A C G T T A C G T G A C C G T A G A T C G T C A A C G T A G C T A C T G A C G T C G A T A C G T A C G T

PH0044.1_Homez/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCACATAGTTTG----
AAAACATCGTTTTTAAG
 A C G T C T A G A G T C C G T A G T A C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C T G A C G T A C G T A C G T A C G T
C G T A G C A T G C T A G C T A T G A C G C T A A C G T G T A C A C T G C G A T C G A T G C A T G A C T A G C T G C T A C T G A C T A G

ISL2/MA0914.1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCACATAGTTTG
GCACTTAA----
 C T A G A G T C C G T A G T A C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C T G
T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GCACATAGTTTG
--CCATTGTTYB
 C T A G A G T C C G T A G T A C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C T G
A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

PB0026.1_Gm397_1/Jaspar

Match Rank:9
Score:0.53
Offset:-7
Orientation:forward strand
Alignment:-------GCACATAGTTTG
CAGATGTGCACATACGT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C C G T A G T A C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C T G
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:10
Score:0.53
Offset:-7
Orientation:forward strand
Alignment:-------GCACATAGTTTG
TACATGTGCACATAAAA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C C G T A G T A C C G T A A C G T C G T A A C T G A C G T A C G T A C G T A C T G
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A A C G T A C G T