Information for 4-AGSCTGGCATTT (Motif 7)

C G T A C T A G A T C G T A G C A C G T A C T G A T C G A G T C C G T A A G C T A C G T A G C T
Reverse Opposite:
C T G A C G T A C T G A A C G T C T A G A T G C G T A C C G T A A T C G A T G C A G T C C G A T
p-value:1e-7
log p-value:-1.690e+01
Information Content per bp:1.819
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif5.65%
Number of Background Sequences with motif130.9
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets81.6 +/- 63.6bp
Average Position of motif in Background105.5 +/- 52.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---AGSCTGGCATTT-
NGTAGGTTGGCATNNN
A C G T A C G T A C G T C G T A C T A G A T C G T A G C A C G T A C T G A T C G A G T C C G T A A G C T A C G T A G C T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:AGSCTGGCATTT
-GGTTGGCAT--
C G T A C T A G A T C G T A G C A C G T A C T G A T C G A G T C C G T A A G C T A C G T A G C T
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AGSCTGGCATTT
-VGCTGGCA---
C G T A C T A G A T C G T A G C A C G T A C T G A T C G A G T C C G T A A G C T A C G T A G C T
A C G T T A G C T A C G A T G C C A G T T C A G T A C G G A T C C T G A A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AGSCTGGCATTT
TGTCTGDCACCT
C G T A C T A G A T C G T A G C A C G T A C T G A T C G A G T C C G T A A G C T A C G T A G C T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

HIC2/MA0738.1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGSCTGGCATTT
-NGTGGGCAT--
C G T A C T A G A T C G T A G C A C G T A C T G A T C G A G T C C G T A A G C T A C G T A G C T
A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGSCTGGCATTT
GGTCTGGCAT--
C G T A C T A G A T C G T A G C A C G T A C T G A T C G A G T C C G T A A G C T A C G T A G C T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T

TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AGSCTGGCATTT-
---CTGGAATGYA
C G T A C T A G A T C G T A G C A C G T A C T G A T C G A G T C C G T A A G C T A C G T A G C T A C G T
A C G T A C G T A C G T G T A C G A C T A C T G A C T G C G T A C G T A A C G T A C T G G A T C T C G A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGSCTGGCATTT-
-GSCTGTCACTCA
C G T A C T A G A T C G T A G C A C G T A C T G A T C G A G T C C G T A A G C T A C G T A G C T A C G T
A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGSCTGGCATTT
--NTTGGCANN-
C G T A C T A G A T C G T A G C A C G T A C T G A T C G A G T C C G T A A G C T A C G T A G C T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AGSCTGGCATTT
--CTTGGCAA--
C G T A C T A G A T C G T A G C A C G T A C T G A T C G A G T C C G T A A G C T A C G T A G C T
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T