Information for 2-CAATTAAG (Motif 8)

A T G C C G T A C G T A G C A T A G C T T G C A C G T A A C T G
Reverse Opposite:
T G A C A C G T A C G T T C G A C G T A C G A T C G A T A T C G
p-value:1e-6
log p-value:-1.503e+01
Information Content per bp:1.800
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif29.03%
Number of Background Sequences with motif6014.9
Percentage of Background Sequences with motif12.00%
Average Position of motif in Targets94.1 +/- 53.4bp
Average Position of motif in Background99.8 +/- 61.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MSX2/MA0708.1/Jaspar

Match Rank:1
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-CAATTAAG
CCAATTAA-
 A C G T A T G C C G T A C G T A G C A T A G C T T G C A C G T A A C T G
T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:2
Score:0.83
Offset:-5
Orientation:forward strand
Alignment:-----CAATTAAG----
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A C G T A G C A T A G C T T G C A C G T A A C T G A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:3
Score:0.83
Offset:-5
Orientation:forward strand
Alignment:-----CAATTAAG----
ACAAGCAATTAATGAAT
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A C G T A G C A T A G C T T G C A C G T A A C T G A C G T A C G T A C G T A C G T
T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

Msx3/MA0709.1/Jaspar

Match Rank:4
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-CAATTAAG
CCAATTAA-
 A C G T A T G C C G T A C G T A G C A T A G C T T G C A C G T A A C T G
T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:5
Score:0.81
Offset:-6
Orientation:forward strand
Alignment:------CAATTAAG--
AAAAACCAATTAAGAA
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A C G T A G C A T A G C T T G C A C G T A A C T G A C G T A C G T
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A

MSX1/MA0666.1/Jaspar

Match Rank:6
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-CAATTAAG
CCAATTAG-
 A C G T A T G C C G T A C G T A G C A T A G C T T G C A C G T A A C T G
A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T

Nkx2-5/MA0063.1/Jaspar

Match Rank:7
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:CAATTAAG
CAATTAA-
 A T G C C G T A C G T A G C A T A G C T T G C A C G T A A C T G
G T A C C G T A G T C A A C G T A C G T C T G A G C T A A C G T

PRRX1/MA0716.1/Jaspar

Match Rank:8
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-CAATTAAG
CTAATTAA-
 A C G T A T G C C G T A C G T A G C A T A G C T T G C A C G T A A C T G
A G T C G A C T T C G A G T C A A G C T G A C T G C T A T C G A A C G T

LHX9/MA0701.1/Jaspar

Match Rank:9
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-CAATTAAG
CCAATTAA-
 A C G T A T G C C G T A C G T A G C A T A G C T T G C A C G T A A C T G
A G T C G A T C G T C A C G T A A C G T A C G T C T G A T C G A A C G T

Prrx2/MA0075.2/Jaspar

Match Rank:10
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-CAATTAAG
CCAATTAA-
 A C G T A T G C C G T A C G T A G C A T A G C T T G C A C G T A A C T G
A G T C G A T C T C G A T G C A G A C T G A C T G C T A T C G A A C G T