Information for 2-CACTGTAGGACV (Motif 2)

A G T C C G T A A G T C A C G T A C T G A C G T C G T A A C T G A C T G C G T A A G T C T A C G
Reverse Opposite:
A T G C A C T G A C G T A G T C A G T C A C G T C G T A G T A C C G T A A C T G A C G T A C T G
p-value:1e-21
log p-value:-4.965e+01
Information Content per bp:1.917
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif75.00%
Number of Background Sequences with motif97.3
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets102.9 +/- 59.3bp
Average Position of motif in Background91.8 +/- 149.1bp
Strand Bias (log2 ratio + to - strand density)-2.8
Multiplicity (# of sites on avg that occur together)1.78
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0065.1_Hoxc10/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CACTGTAGGACV---
ANNTTTTACGACNTNN
 A C G T A G T C C G T A A G T C A C G T A C T G A C G T C G T A A C T G A C T G C G T A A G T C T A C G A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CACTGTAGGACV
GCACAYAGTAGGKCY
 A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C T G A C G T C G T A A C T G A C T G C G T A A G T C T A C G
C T A G G A T C T C G A A T G C T C G A A G C T C T G A A C T G A C G T C T G A A C T G A C T G A C G T A G T C G A T C

PH0077.1_Hoxd12/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CACTGTAGGACV---
NNNATTTTACGACNNTN
 A C G T A C G T A G T C C G T A A G T C A C G T A C T G A C G T C G T A A C T G A C T G C G T A A G T C T A C G A C G T A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

PH0066.1_Hoxc11/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CACTGTAGGACV---
NNNTTTTACGACNTTN
 A C G T A G T C C G T A A G T C A C G T A C T G A C G T C G T A A C T G A C T G C G T A A G T C T A C G A C G T A C G T A C G T
G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CACTGTAGGACV
RSCACTYRAG----
 A C G T A C G T A G T C C G T A A G T C A C G T A C T G A C G T C G T A A C T G A C T G C G T A A G T C T A C G
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CACTGTAGGACV
GAGCACAGCAGGACA
 A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C T G A C G T C G T A A C T G A C T G C G T A A G T C T A C G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CACTGTAGGACV
NSCACTYVAV----
 A C G T A C G T A G T C C G T A A G T C A C G T A C T G A C G T C G T A A C T G A C T G C G T A A G T C T A C G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:8
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------CACTGTAGGACV
NNGAGGTTACTNNAGGTCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C A C G T A C T G A C G T C G T A A C T G A C T G C G T A A G T C T A C G
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A

NKX2-8/MA0673.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CACTGTAGGACV
CCACTTGAA----
 A C G T A G T C C G T A A G T C A C G T A C T G A C G T C G T A A C T G A C T G C G T A A G T C T A C G
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T A C G T A C G T

PH0047.1_Hoxa11/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CACTGTAGGACV---
NNGTTTTACGACTTTA
 A C G T A G T C C G T A A G T C A C G T A C T G A C G T C G T A A C T G A C T G C G T A A G T C T A C G A C G T A C G T A C G T
G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A