Information for 15-ACTAACTATC (Motif 20)

C G T A A G T C A C G T C G T A C G T A A G T C A C G T C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T C G T A A C T G A C G T A C G T C G T A A C T G A C G T
p-value:1e-3
log p-value:-7.512e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif8.33%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets66.0 +/- 0.0bp
Average Position of motif in Background118.0 +/- 36.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0107.1_Msx2/Jaspar

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ACTAACTATC---
GAAGACCAATTAGCGCT
 A C G T A C G T A C G T A C G T C G T A A G T C A C G T C G T A C G T A A G T C A C G T C G T A A C G T A G T C A C G T A C G T A C G T
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

PH0050.1_Hoxa3/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ACTAACTATC----
ACTAATTANCNCNA
 C G T A A G T C A C G T C G T A C G T A A G T C A C G T C G T A A C G T A G T C A C G T A C G T A C G T A C G T
T C G A A G T C G A C T G T C A C G T A A C G T A C G T C T G A T A G C A G T C C A G T A G T C T C G A G T C A

LHX2/MA0700.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ACTAACTATC
ACTAATTAAC
 C G T A A G T C A C G T C G T A C G T A A G T C A C G T C G T A A C G T A G T C
T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C

MEOX1/MA0661.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ACTAACTATC
GCTAATTAAC
 C G T A A G T C A C G T C G T A C G T A A G T C A C G T C G T A A C G T A G T C
T C A G T A G C G A C T T G C A C G T A G A C T A C G T C T G A G T C A T A G C

PB0149.1_Myb_2/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ACTAACTATC----
CGACCAACTGCCATGC
 A C G T A C G T C G T A A G T C A C G T C G T A C G T A A G T C A C G T C G T A A C G T A G T C A C G T A C G T A C G T A C G T
A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C

PH0154.1_Prrx1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ACTAACTATC----
GTAACTAATTAACTACT
 A C G T A C G T A C G T C G T A A G T C A C G T C G T A C G T A A G T C A C G T C G T A A C G T A G T C A C G T A C G T A C G T A C G T
T A C G A C G T G T C A T C G A A G T C G A C T T C G A C T G A A G C T A G C T C T G A T C G A A G T C C A G T C T G A T A G C A G C T

PH0092.1_Lhx2/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ACTAACTATC----
TAAACTAATTAGTGAAC
 A C G T A C G T A C G T C G T A A G T C A C G T C G T A C G T A A G T C A C G T C G T A A C G T A G T C A C G T A C G T A C G T A C G T
C G A T T G C A G T C A T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A T G G T C A G T C A A T G C

VSX2/MA0726.1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ACTAACTATC
-CTAATTAG-
 C G T A A G T C A C G T C G T A C G T A A G T C A C G T C G T A A C G T A G T C
A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G A C G T

LHX6/MA0658.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ACTAACTATC
ACTAATTAGC
 C G T A A G T C A C G T C G T A C G T A A G T C A C G T C G T A A C G T A G T C
T C G A A G T C A G C T T C G A G T C A A G C T A G C T C T G A T C A G A G T C

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:ACTAACTATC
NCTAATTA--
 C G T A A G T C A C G T C G T A C G T A A G T C A C G T C G T A A C G T A G T C
T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A A C G T A C G T