Information for 9-TCAAGTGGATGT (Motif 9)

A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A A C G T A G T C A G T C C G T A A G T C A C G T A C G T A C T G C G T A
p-value:1e-17
log p-value:-3.950e+01
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif58.33%
Number of Background Sequences with motif60.2
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets93.3 +/- 65.3bp
Average Position of motif in Background125.5 +/- 101.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0171.1_Nkx2-1/Jaspar

Match Rank:1
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----TCAAGTGGATGT
AANTTCAAGTGGCTTN
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

PH0114.1_Nkx2-5/Jaspar

Match Rank:2
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----TCAAGTGGATGT
AAATTCAAGTGGNTTN
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

PH0111.1_Nkx2-2/Jaspar

Match Rank:3
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----TCAAGTGGATGT
NANTTTCAAGTGGTTAN
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

PH0113.1_Nkx2-4/Jaspar

Match Rank:4
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----TCAAGTGGATGT
AATTTCAAGTGGCTTN
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A

NKX2-3/MA0672.1/Jaspar

Match Rank:5
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TCAAGTGGATGT
NTCAAGTGGN---
 A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:6
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TCAAGTGGATGT
NTCAAGTGG----
 A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:7
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TCAAGTGGATGT
AATNTTAAGTGGNTNN
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TCAAGTGGATGT-
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:9
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TCAAGTGGATGT
BTBRAGTGSN---
 A C G T A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TCAAGTGGATGT
TTRAGTGSYK--
 A C G T A G T C C G T A C G T A A C T G A C G T A C T G A C T G C G T A A C G T A C T G A C G T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T