Information for 6-GTTCTDCAGTGT (Motif 5)

A C T G A C G T A G C T A G T C A G C T C G T A G T A C C G T A A C T G A C G T A C T G A C G T
Reverse Opposite:
G T C A A G T C C G T A A G T C A C G T A C T G G C A T C T G A A C T G C T G A C G T A A G T C
p-value:1e-10
log p-value:-2.486e+01
Information Content per bp:1.860
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif17.86%
Number of Background Sequences with motif30.6
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets89.5 +/- 66.4bp
Average Position of motif in Background93.3 +/- 88.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:1
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GTTCTDCAGTGT-
---CTYRAGTGSY
 A C T G A C G T A G C T A G T C A G C T C G T A G T A C C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:2
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GTTCTDCAGTGT--
----TTRAGTGSYK
 A C T G A C G T A G C T A G T C A G C T C G T A G T A C C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

NKX2-8/MA0673.1/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GTTCTDCAGTGT
---NTCAAGTGG
 A C T G A C G T A G C T A G T C A G C T C G T A G T A C C G T A A C T G A C G T A C T G A C G T
A C G T A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G

PH0004.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GTTCTDCAGTGT-----
NTNNTTAAGTGGTTANN
 A C T G A C G T A G C T A G T C A G C T C G T A G T A C C G T A A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GTTCTDCAGTGT-
---BTBRAGTGSN
 A C T G A C G T A G C T A G T C A G C T C G T A G T A C C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GTTCTDCAGTGT-
---NTCAAGTGGN
 A C T G A C G T A G C T A G T C A G C T C G T A G T A C C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GTTCTDCAGTGT-----
NNTGTTCTTTTTTGTTTACT
 A C G T A C G T A C G T A C T G A C G T A G C T A G T C A G C T C G T A G T A C C G T A A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G C A T G C T A C G A T A T C G G C A T C G A T G A T C G A C T G C A T A G C T A G C T A G C T G C A T T C A G A C G T A C G T A C G T C T G A G A T C G C A T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GTTCTDCAGTGT-----
NTNNTTAAGTGGNTNAN
 A C T G A C G T A G C T A G T C A G C T C G T A G T A C C G T A A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GTTCTDCAGTGT----
NNNANTGCAGTGCNNTT
 A C G T A C T G A C G T A G C T A G T C A G C T C G T A G T A C C G T A A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

NKX3-2/MA0122.2/Jaspar

Match Rank:10
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GTTCTDCAGTGT-
----TTAAGTGGN
 A C T G A C G T A G C T A G T C A G C T C G T A G T A C C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T