Information for 4-TGWYTKTCWG (Motif 9)

G C A T T C A G C G T A G A C T G C A T C A G T G C A T G A T C G C T A A T C G
Reverse Opposite:
T A G C C G A T C T A G C G T A G T C A C G T A C T G A C G A T A G T C C G T A
p-value:1e-7
log p-value:-1.811e+01
Information Content per bp:1.557
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif39.9
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets99.0 +/- 67.8bp
Average Position of motif in Background84.8 +/- 71.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX2/MA1113.1/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TGWYTKTCWG
NCTGTCAATCAN
 A C G T A C G T G C A T T C A G C G T A G A C T G C A T C A G T G C A T G A T C G C T A A T C G
A T G C T A G C G A C T T C A G G A C T T G A C G T C A T G C A G A C T G T A C G C T A A G T C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TGWYTKTCWG
SCTGTCAVTCAV
 A C G T A C G T G C A T T C A G C G T A G A C T G C A T C A G T G C A T G A T C G C T A A T C G
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TGWYTKTCWG
NCTGTCAATCAN
 A C G T A C G T G C A T T C A G C G T A G A C T G C A T C A G T G C A T G A T C G C T A A T C G
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGWYTKTCWG
GSCTGTCACTCA-
 A C G T A C G T A C G T G C A T T C A G C G T A G A C T G C A T C A G T G C A T G A T C G C T A A T C G
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T

PBX3/MA1114.1/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----TGWYTKTCWG--
NNNCCTGTCACTCANNN
 A C G T A C G T A C G T A C G T A C G T G C A T T C A G C G T A G A C T G C A T C A G T G C A T G A T C G C T A A T C G A C G T A C G T
T A G C A G T C T A C G A T G C T G A C G A C T A T C G G A C T A T G C G T C A T G A C G C A T A G T C G C T A T G A C T G A C A T G C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TGWYTKTCWG--
TGTCTGDCACCT
 G C A T T C A G C G T A G A C T G C A T C A G T G C A T G A T C G C T A A T C G A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PRDM1/MA0508.2/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TGWYTKTCWG
TCACTTTCAC
 G C A T T C A G C G T A G A C T G C A T C A G T G C A T G A T C G C T A A T C G
G C A T G A T C T C G A G A T C C A G T C G A T G C A T T G A C G C T A G A T C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGWYTKTCWG--
CTGTCTGTCACCT
 A C G T G C A T T C A G C G T A G A C T G C A T C A G T G C A T G A T C G C T A A T C G A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PH0017.1_Cux1_2/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TGWYTKTCWG--
TAGTGATCATCATTA
 A C G T A C G T A C G T G C A T T C A G C G T A G A C T G C A T C A G T G C A T G A T C G C T A A T C G A C G T A C G T
G A C T G C T A C A T G A G C T C A T G G C T A C G A T G A T C C G T A C A G T G A T C T C G A A G C T A C G T G C T A

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TGWYTKTCWG
---NTGTCAN
 G C A T T C A G C G T A G A C T G C A T C A G T G C A T G A T C G C T A A T C G
A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A