Information for 21-ATAGATAGAT (Motif 25)

C G T A A C G T C G T A C A T G C G T A C G A T C G T A A T C G C G T A C A G T
Reverse Opposite:
G T C A A C G T A T G C C G A T G C T A A C G T G T A C C G A T C G T A A C G T
p-value:1e-4
log p-value:-1.082e+01
Information Content per bp:1.866
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif8.93%
Number of Background Sequences with motif807.3
Percentage of Background Sequences with motif1.67%
Average Position of motif in Targets73.0 +/- 24.5bp
Average Position of motif in Background101.4 +/- 83.1bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1/MA0070.1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:ATAGATAGAT--
TTTGATTGATGN
 C G T A A C G T C G T A C A T G C G T A C G A T C G T A A T C G C G T A C A G T A C G T A C G T
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:ATAGATAGAT--
--TGATKGATGR
 C G T A A C G T C G T A C A T G C G T A C G A T C G T A A T C G C G T A C A G T A C G T A C G T
A C G T A C G T C G A T C T A G C G T A G A C T C A G T C T A G C G T A A G C T C A T G C T A G

PB0144.1_Lef1_2/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ATAGATAGAT----
NNANTGATTGATNTTN
 A C G T A C G T C G T A A C G T C G T A C A T G C G T A C G A T C G T A A T C G C G T A C A G T A C G T A C G T A C G T A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-ATAGATAGAT
TATCGATNAN-
 A C G T C G T A A C G T C G T A C A T G C G T A C G A T C G T A A T C G C G T A C A G T
A C G T T G C A A G C T G A T C C T A G C T G A A G C T G T C A T C G A C G T A A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:ATAGATAGAT---
-ATGATKGATGRC
 C G T A A C G T C G T A C A T G C G T A C G A T C G T A A T C G C G T A C A G T A C G T A C G T A C G T
A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:6
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:ATAGATAGAT----
----ATTGATTYND
 C G T A A C G T C G T A C A T G C G T A C G A T C G T A A T C G C G T A C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ATAGATAGAT----
NNANTGATTGATNNNN
 A C G T A C G T C G T A A C G T C G T A C A T G C G T A C G A T C G T A A T C G C G T A C A G T A C G T A C G T A C G T A C G T
G C A T C G A T T G C A T A C G G A C T C T A G G T C A G A C T C G A T T C A G C G T A C G A T A T G C A G C T G A C T A T G C

MEF2D/MA0773.1/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ATAGATAGAT
ACTATAAATAGA-
 A C G T A C G T A C G T C G T A A C G T C G T A C A T G C G T A C G A T C G T A A T C G C G T A C A G T
C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A A C G T

MEF2A/MA0052.3/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ATAGATAGAT
TCTAAAAATAGA-
 A C G T A C G T A C G T C G T A A C G T C G T A C A T G C G T A C G A T C G T A A T C G C G T A C A G T
C A G T G A T C A G C T G C T A C G T A G C T A C G T A G C T A A G C T G T C A C T A G G T C A A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:ATAGATAGAT--
--TGATTGATGA
 C G T A A C G T C G T A C A T G C G T A C G A T C G T A A T C G C G T A C A G T A C G T A C G T
A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A