Information for 1-CCGCTGCTGG (Motif 1)

T G A C A T G C A C T G A T G C A C G T A C T G A G T C A C G T A T C G A C T G
Reverse Opposite:
A G T C A T G C C G T A A C T G G T A C C G T A A T C G T G A C T A C G A C T G
p-value:1e-11
log p-value:-2.672e+01
Information Content per bp:1.802
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif2.80%
Number of Background Sequences with motif462.6
Percentage of Background Sequences with motif0.97%
Average Position of motif in Targets97.5 +/- 56.8bp
Average Position of motif in Background101.0 +/- 56.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CCGCTGCTGG-
CCCCCTGCTGTG
 A C G T T G A C A T G C A C T G A T G C A C G T A C T G A G T C A C G T A T C G A C T G A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

ASCL1/MA1100.1/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CCGCTGCTGG
NNCCAGCTGCTNN
 A C G T A C G T A C G T T G A C A T G C A C T G A T G C A C G T A C T G A G T C A C G T A T C G A C T G
A T G C T A C G T A G C T A G C T G C A A T C G T A G C G C A T A T C G A G T C G A C T A T C G A T G C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCGCTGCTGG--
GGCCYCCTGCTGDGH
 A C G T A C G T A C G T T G A C A T G C A C T G A T G C A C G T A C T G A G T C A C G T A T C G A C T G A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCGCTGCTGG
CAGCAGCTGN
 T G A C A T G C A C T G A T G C A C G T A C T G A G T C A C G T A T C G A C T G
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.64
Offset:-9
Orientation:forward strand
Alignment:---------CCGCTGCTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C A T G C A C T G A T G C A C G T A C T G A G T C A C G T A T C G A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CCGCTGCTGG
----NGCTN-
 T G A C A T G C A C T G A T G C A C G T A C T G A G T C A C G T A T C G A C T G
A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T

CTCF/MA0139.1/Jaspar

Match Rank:7
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------CCGCTGCTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T T G A C A T G C A C T G A T G C A C G T A C T G A G T C A C G T A T C G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCGCTGCTGG
-ANCAGCTG-
 T G A C A T G C A C T G A T G C A C G T A C T G A G T C A C G T A T C G A C T G
A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCGCTGCTGG----
TCNCCTGCTGNGNNN
 A C G T T G A C A T G C A C T G A T G C A C G T A C T G A G T C A C G T A T C G A C T G A C G T A C G T A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Ascl2/MA0816.1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCGCTGCTGG
AGCAGCTGCT--
 A C G T A C G T T G A C A T G C A C T G A T G C A C G T A C T G A G T C A C G T A T C G A C T G
T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T