Information for 2-CTATACAGAT (Motif 3)

A G T C A G C T T C G A C G A T T C G A T G A C T C G A A T C G T C G A G A C T
Reverse Opposite:
C T G A A G C T T A G C A G C T A C T G A G C T G C T A A G C T T C G A T C A G
p-value:1e-9
log p-value:-2.243e+01
Information Content per bp:1.515
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif1.88%
Number of Background Sequences with motif269.3
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets108.0 +/- 55.8bp
Average Position of motif in Background99.9 +/- 58.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CTATACAGAT
NGYCATAAAWCH
 A C G T A C G T A G T C A G C T T C G A C G A T T C G A T G A C T C G A A T C G T C G A G A C T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTATACAGAT-
-TATGCAAATC
 A G T C A G C T T C G A C G A T T C G A T G A C T C G A A T C G T C G A G A C T A C G T
A C G T G A C T C G T A C A G T A C T G A G T C C G T A C G T A C G T A C A G T T G A C

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTATACAGAT
KGCCATAAAA--
 A C G T A C G T A G T C A G C T T C G A C G A T T C G A T G A C T C G A A T C G T C G A G A C T
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTATACAGAT--
--ATGMATATDC
 A G T C A G C T T C G A C G A T T C G A T G A C T C G A A T C G T C G A G A C T A C G T A C G T
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

HOXA13/MA0650.1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTATACAGAT
CCAATAAAAA-
 A C G T A G T C A G C T T C G A C G A T T C G A T G A C T C G A A T C G T C G A G A C T
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTATACAGAT
CYHATAAAAN-
 A C G T A G T C A G C T T C G A C G A T T C G A T G A C T C G A A T C G T C G A G A C T
T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTATACAGAT-----
GTATAAAAGGCGGGG
 A G T C A G C T T C G A C G A T T C G A T G A C T C G A A T C G T C G A G A C T A C G T A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

ZBTB18/MA0698.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTATACAGAT----
-CATCCAGATGTTC
 A G T C A G C T T C G A C G A T T C G A T G A C T C G A A T C G T C G A G A C T A C G T A C G T A C G T A C G T
A C G T G T A C C G T A A C G T T G A C G T A C C G T A A T C G G T C A A C G T C T A G G A C T C A G T A G T C

TBP/MA0108.2/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CTATACAGAT-----
GTATAAAAGGCGGGG
 A G T C A G C T T C G A C G A T T C G A T G A C T C G A A T C G T C G A G A C T A C G T A C G T A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTATACAGAT
GCAATAAAA--
 A C G T A G T C A G C T T C G A C G A T T C G A T G A C T C G A A T C G T C G A G A C T
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T