Information for 3-ACGGTGAAGG (Motif 4)

C T G A G T A C C T A G A C T G A G C T A C T G T C G A G T C A C T A G A C T G
Reverse Opposite:
A G T C A G T C C A G T A G C T A G T C T C G A T G A C G A T C A C T G A G C T
p-value:1e-9
log p-value:-2.154e+01
Information Content per bp:1.831
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif163.1
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets110.7 +/- 60.5bp
Average Position of motif in Background98.1 +/- 53.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:ACGGTGAAGG---
-AGGTCAAGGTCA
 C T G A G T A C C T A G A C T G A G C T A C T G T C G A G T C A C T A G A C T G A C G T A C G T A C G T
A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ACGGTGAAGG---
-TGGGGAAGGGCM
 C T G A G T A C C T A G A C T G A G C T A C T G T C G A G T C A C T A G A C T G A C G T A C G T A C G T
A C G T G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ACGGTGAAGG---
-AGGTCAAGGTCA
 C T G A G T A C C T A G A C T G A G C T A C T G T C G A G T C A C T A G A C T G A C G T A C G T A C G T
A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-ACGGTGAAGG-
GAAAGTGAAAGT
 A C G T C T G A G T A C C T A G A C T G A G C T A C T G T C G A G T C A C T A G A C T G A C G T
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

POL008.1_DCE_S_I/Jaspar

Match Rank:5
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:ACGGTGAAGG
----NGAAGC
 C T G A G T A C C T A G A C T G A G C T A C T G T C G A G T C A C T A G A C T G
A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C

ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:ACGGTGAAGG----
--NBYCAAGGTCAC
 C T G A G T A C C T A G A C T G A G C T A C T G T C G A G T C A C T A G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A T C G A T G C A G C T T A G C T C G A C T G A C T A G A C T G C A G T A T G C C T G A G T A C

PRDM1/MA0508.2/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:ACGGTGAAGG---
---GTGAAAGTGA
 C T G A G T A C C T A G A C T G A G C T A C T G T C G A G T C A C T A G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C G A T A C T G C G T A G C T A G T C A C T A G A G C T C T A G C G T A

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ACGGTGAAGG-----
AAGTTCAAGGTCAGC
 C T G A G T A C C T A G A C T G A G C T A C T G T C G A G T C A C T A G A C T G A C G T A C G T A C G T A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

Esrrg/MA0643.1/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:ACGGTGAAGG----
----TCAAGGTCAT
 C T G A G T A C C T A G A C T G A G C T A C T G T C G A G T C A C T A G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:ACGGTGAAGG---
---NTCAAGGTCA
 C T G A G T A C C T A G A C T G A G C T A C T G T C G A G T C A C T A G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A