Information for 1-RAAGAAACTTGG (Motif 1)

C T G A T G C A C G T A A C T G C G T A C G T A C G T A G A T C A G C T C G A T A C T G A C T G
Reverse Opposite:
A G T C G T A C C G T A C T G A C T A G C G A T G C A T A C G T G T A C A C G T A C G T G A C T
p-value:1e-11
log p-value:-2.628e+01
Information Content per bp:1.741
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif7.39%
Number of Background Sequences with motif228.9
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets110.6 +/- 45.1bp
Average Position of motif in Background99.3 +/- 55.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.59
Offset:5
Orientation:forward strand
Alignment:RAAGAAACTTGG----
-----TACTTGGCAGA
 C T G A T G C A C G T A A C T G C G T A C G T A C G T A G A T C A G C T C G A T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

Nr2e3/MA0164.1/Jaspar

Match Rank:2
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:RAAGAAACTTGG
----AAGCTTG-
 C T G A T G C A C G T A A C T G C G T A C G T A C G T A G A T C A G C T C G A T A C T G A C T G
A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T

PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer

Match Rank:3
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:RAAGAAACTTGG------
---AAAACCTGGANHGGR
 C T G A T G C A C G T A A C T G C G T A C G T A C G T A G A T C A G C T C G A T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A T C G A T C G A A G T C T G A C G A C T A C T G C T A G G T C A T A G C G C A T T C A G C T A G T C A G

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-RAAGAAACTTGG
AAGATATCCTT--
 A C G T C T G A T G C A C G T A A C T G C G T A C G T A C G T A G A T C A G C T C G A T A C T G A C T G
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:RAAGAAACTTGG----
-------NTTGGCANN
 C T G A T G C A C G T A A C T G C G T A C G T A C G T A G A T C A G C T C G A T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:RAAGAAACTTGG----
------NNTTGGCANN
 C T G A T G C A C G T A A C T G C G T A C G T A C G T A G A T C A G C T C G A T A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:RAAGAAACTTGG
-AACAAT-----
 C T G A T G C A C G T A A C T G C G T A C G T A C G T A G A T C A G C T C G A T A C T G A C T G
A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:RAAGAAACTTGG
-AATAAACAATN
 C T G A T G C A C G T A A C T G C G T A C G T A C G T A G A T C A G C T C G A T A C T G A C T G
A C G T G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:9
Score:0.50
Offset:4
Orientation:forward strand
Alignment:RAAGAAACTTGG-------
----AAWCTAGGTCARDNN
 C T G A T G C A C G T A A C T G C G T A C G T A C G T A G A T C A G C T C G A T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G T A C G T A A G T C A G C T C T G A A C T G A C T G A G C T A G T C C G T A C T A G C T A G C T A G T G C A

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.50
Offset:0
Orientation:forward strand
Alignment:RAAGAAACTTGG
ACTGAAACCA--
 C T G A T G C A C G T A A C T G C G T A C G T A C G T A G A T C A G C T C G A T A C T G A C T G
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T