Information for 3-GTTGAAGG (Motif 16)

A C T G A C G T C G A T A C T G C G T A C G T A A C T G A C T G
Reverse Opposite:
G T A C A G T C C G A T A C G T A G T C C G T A G T C A A G T C
p-value:1e-3
log p-value:-8.700e+00
Information Content per bp:1.875
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif13.64%
Number of Background Sequences with motif2950.7
Percentage of Background Sequences with motif6.04%
Average Position of motif in Targets101.3 +/- 59.6bp
Average Position of motif in Background98.6 +/- 62.6bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GTTGAAGG---
AGGTCAAGGTCA
 A C G T A C T G A C G T C G A T A C T G C G T A C G T A A C T G A C T G A C G T A C G T A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GTTGAAGG---
AGGTCAAGGTCA
 A C G T A C T G A C G T C G A T A C T G C G T A C G T A A C T G A C T G A C G T A C G T A C G T
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GTTGAAGG
--NGAAGC
 A C T G A C G T C G A T A C T G C G T A C G T A A C T G A C T G
A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GTTGAAGG--
GTTAATGGCC
 A C T G A C G T C G A T A C T G C G T A C G T A A C T G A C T G A C G T A C G T
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

Nr5a2/MA0505.1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTTGAAGG-----
AAGTTCAAGGTCAGC
 A C G T A C G T A C T G A C G T C G A T A C T G C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTTGAAGG----
NBYCAAGGTCAC
 A C T G A C G T C G A T A C T G C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A T C G A T G C A G C T T A G C T C G A C T G A C T A G A C T G C A G T A T G C C T G A G T A C

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GTTGAAGG---
TGGGGAAGGGCM
 A C G T A C T G A C G T C G A T A C T G C G T A C G T A A C T G A C T G A C G T A C G T A C G T
G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A

PH0134.1_Pbx1/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GTTGAAGG----
NNNNNATTGATGNGTGN
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T C G A T A C T G C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

Esrrg/MA0643.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GTTGAAGG----
--TCAAGGTCAT
 A C T G A C G T C G A T A C T G C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GTTGAAGG-
GGTGYTGACAGS
 A C G T A C G T A C G T A C T G A C G T C G A T A C T G C G T A C G T A A C T G A C T G A C G T
T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G