Information for 2-YGGTGCTGGCCA (Motif 3)

A G T C T A C G T A C G C G A T A C T G A G T C G C A T A C T G T C A G G A T C A G T C C T G A
Reverse Opposite:
G A C T T C A G C T A G A G T C A G T C C G T A C T A G A G T C C G T A A T G C A T G C T C A G
p-value:1e-10
log p-value:-2.514e+01
Information Content per bp:1.678
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif14.77%
Number of Background Sequences with motif1412.1
Percentage of Background Sequences with motif2.89%
Average Position of motif in Targets107.6 +/- 59.3bp
Average Position of motif in Background101.5 +/- 61.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:1
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:YGGTGCTGGCCA--
--CYWSTGGTCARA
 A G T C T A C G T A C G C G A T A C T G A G T C G C A T A C T G T C A G G A T C A G T C C T G A A C G T A C G T
A C G T A C G T G A T C G A C T C G T A T A G C C G A T A C T G A C T G G A C T T G A C C G T A T C A G C T G A

ASCL1/MA1100.1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--YGGTGCTGGCCA
GCAGCAGCTGGCG-
 A C G T A C G T A G T C T A C G T A C G C G A T A C T G A G T C G C A T A C T G T C A G G A T C A G T C C T G A
T A C G T A G C C T G A T C A G T A G C C G T A A T C G T A G C A C G T A T C G A T C G A T G C T A C G A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:YGGTGCTGGCCA
--WDNCTGGGCA
 A G T C T A C G T A C G C G A T A C T G A G T C G C A T A C T G T C A G G A T C A G T C C T G A
A C G T A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-YGGTGCTGGCCA
CAGCAGCTGN---
 A C G T A G T C T A C G T A C G C G A T A C T G A G T C G C A T A C T G T C A G G A T C A G T C C T G A
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:YGGTGCTGGCCA
---NGCTN----
 A G T C T A C G T A C G C G A T A C T G A G T C G C A T A C T G T C A G G A T C A G T C C T G A
A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:YGGTGCTGGCCA-
---TGCTGACTCA
 A G T C T A C G T A C G C G A T A C T G A G T C G C A T A C T G T C A G G A T C A G T C C T G A A C G T
A C G T A C G T A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A

NRL/MA0842.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-YGGTGCTGGCCA
AATTTGCTGAC--
 A C G T A G T C T A C G T A C G C G A T A C T G A G T C G C A T A C T G T C A G G A T C A G T C C T G A
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-YGGTGCTGGCCA
NAACAGCTGG---
 A C G T A G T C T A C G T A C G C G A T A C T G A G T C G C A T A C T G T C A G G A T C A G T C C T G A
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--YGGTGCTGGCCA
NNAGCAGCTGCT--
 A C G T A C G T A G T C T A C G T A C G C G A T A C T G A G T C G C A T A C T G T C A G G A T C A G T C C T G A
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:YGGTGCTGGCCA
--CAGCTGNT--
 A G T C T A C G T A C G C G A T A C T G A G T C G C A T A C T G T C A G G A T C A G T C C T G A
A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T