Information for 4-GGCACAGCAG (Motif 4)

A C T G A C T G G T A C C T G A A G T C G T C A A C T G A T G C C T G A A C T G
Reverse Opposite:
A G T C A G C T A T C G A G T C A C G T A C T G A G C T C A T G G T A C G T A C
p-value:1e-9
log p-value:-2.264e+01
Information Content per bp:1.829
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif189.7
Percentage of Background Sequences with motif0.39%
Average Position of motif in Targets90.0 +/- 68.2bp
Average Position of motif in Background99.3 +/- 60.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GGCACAGCAG----
GAGCACAGCAGGACA
 A C G T A C T G A C T G G T A C C T G A A G T C G T C A A C T G A T G C C T G A A C T G A C G T A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GGCACAGCAG
GGAACAGCCG
 A C T G A C T G G T A C C T G A A G T C G T C A A C T G A T G C C T G A A C T G
C T A G A C T G T G C A G T C A A T G C C G T A A T C G A T G C A G T C C T A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.75
Offset:2
Orientation:forward strand
Alignment:GGCACAGCAG----
--CACAGCAGGGGG
 A C T G A C T G G T A C C T G A A G T C G T C A A C T G A T G C C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:GGCACAGCAG------
-DCHCAGCAGGRGGCC
 A C T G A C T G G T A C C T G A A G T C G T C A A C T G A T G C C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GGCACAGCAG----
CCACACAGCAGGAGA
 A C G T A C T G A C T G G T A C C T G A A G T C G T C A A C T G A T G C C T G A A C T G A C G T A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GGCACAGCAG-
-DCTCAGCAGG
 A C T G A C T G G T A C C T G A A G T C G T C A A C T G A T G C C T G A A C T G A C G T
A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:GGCACAGCAG
--CACAGN--
 A C T G A C T G G T A C C T G A A G T C G T C A A C T G A T G C C T G A A C T G
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GGCACAGCAG----
CCACACAGCAGGAGA
 A C G T A C T G A C T G G T A C C T G A A G T C G T C A A C T G A T G C C T G A A C T G A C G T A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Myod1/MA0499.1/Jaspar

Match Rank:9
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GGCACAGCAG--
NGNGACAGCTGCN
 A C G T A C T G A C T G G T A C C T G A A G T C G T C A A C T G A T G C C T G A A C T G A C G T A C G T
T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:10
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GGCACAGCAG
--AACAGCTG
 A C T G A C T G G T A C C T G A A G T C G T C A A C T G A T G C C T G A A C T G
A C G T A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G