Information for 6-GAGCTTAGCAGG (Motif 10)

A T C G C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C T G A A C T G C T A G
Reverse Opposite:
A G T C A G T C A G C T A C T G A G T C A C G T G T C A C G T A A C T G A G T C A C G T A T G C
p-value:1e-8
log p-value:-1.937e+01
Information Content per bp:1.888
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets91.6 +/- 64.8bp
Average Position of motif in Background115.4 +/- 3.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GAGCTTAGCAGG
--DCTCAGCAGG
 A T C G C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C T G A A C T G C T A G
A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GAGCTTAGCAGG---
---CACAGCAGGGGG
 A T C G C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C T G A A C T G C T A G A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GAGCTTAGCAGG-----
--DCHCAGCAGGRGGCC
 A T C G C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C T G A A C T G C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAGCTTAGCAGG---
GAGCACAGCAGGACA
 A T C G C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C T G A A C T G C T A G A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GAGCTTAGCAGG---
CCACACAGCAGGAGA
 A T C G C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C T G A A C T G C T A G A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAGCTTAGCAGG---
CCACACAGCAGGAGA
 A T C G C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C T G A A C T G C T A G A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GAGCTTAGCAGG
-GGATTAGC---
 A T C G C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C T G A A C T G C T A G
A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T A C G T

NFIC/MA0161.2/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GAGCTTAGCAGG
-TACTTGGCAGA
 A T C G C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C T G A A C T G C T A G
A C G T G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAGCTTAGCAGG
CAGCC-------
 A T C G C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C T G A A C T G C T A G
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL001.1_MTE/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GAGCTTAGCAGG---
TTTCGAGCGGAACGGTCGC
 A C G T A C G T A C G T A C G T A T C G C G T A A C T G A G T C A C G T A C G T C G T A A C T G A G T C C T G A A C T G C T A G A C G T A C G T A C G T
A C G T G A C T A G C T A G T C C T A G C G T A C T A G A G T C A T C G T A C G C G T A C T A G A G T C A C T G A T C G C G A T G A T C T A C G A G C T