Information for 7-TCAATAAATATT (Motif 12)

A C G T A T G C G T C A C T G A A G C T C G T A C T G A C G T A A G C T C T G A A C G T A C G T
Reverse Opposite:
C G T A T G C A A G C T C T G A A C G T A G C T A C G T C T G A A G C T A C G T T A C G T G C A
p-value:1e-7
log p-value:-1.821e+01
Information Content per bp:1.851
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.22%
Number of Background Sequences with motif161.6
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets109.8 +/- 55.1bp
Average Position of motif in Background98.7 +/- 57.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.71
Offset:3
Orientation:forward strand
Alignment:TCAATAAATATT-
---ATGAATATTC
 A C G T A T G C G T C A C T G A A G C T C G T A C T G A C G T A A G C T C T G A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

Foxq1/MA0040.1/Jaspar

Match Rank:2
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TCAATAAATATT-
--AATAAACAATN
 A C G T A T G C G T C A C T G A A G C T C G T A C T G A C G T A A G C T C T G A A C G T A C G T A C G T
A C G T A C G T G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A

Arid5a/MA0602.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TCAATAAATATT--
NNTNNCAATATTAG
 A C G T A T G C G T C A C T G A A G C T C G T A C T G A C G T A A G C T C T G A A C G T A C G T A C G T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TCAATAAATATT--
NNTNNCAATATTAG
 A C G T A T G C G T C A C T G A A G C T C G T A C T G A C G T A A G C T C T G A A C G T A C G T A C G T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

HOXA13/MA0650.1/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TCAATAAATATT
CCAATAAAAA--
 A C G T A T G C G T C A C T G A A G C T C G T A C T G A C G T A A G C T C T G A A C G T A C G T
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:6
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TCAATAAATATT-
-AAACAAACATTC
 A C G T A T G C G T C A C T G A A G C T C G T A C T G A C G T A A G C T C T G A A C G T A C G T A C G T
A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

MF0005.1_Forkhead_class/Jaspar

Match Rank:7
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TCAATAAATATT
-AAATAAACA--
 A C G T A T G C G T C A C T G A A G C T C G T A C T G A C G T A A G C T C T G A A C G T A C G T
A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TCAATAAATATT
TATGTAAATAT-
 A C G T A T G C G T C A C T G A A G C T C G T A C T G A C G T A A G C T C T G A A C G T A C G T
G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TCAATAAATATT-
CTACCAATAAAATTCT
 A C G T A C G T A C G T A C G T A T G C G T C A C T G A A G C T C G T A C T G A C G T A A G C T C T G A A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TCAATAAATATT
CCAATAAAAC--
 A C G T A T G C G T C A C T G A A G C T C G T A C T G A C G T A A G C T C T G A A C G T A C G T
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T