Information for 3-TGGGACTTGGCA (Motif 4)

A C G T A C T G A C T G C A T G G T C A T A G C G A C T A C G T A C T G A T C G T A G C G T C A
Reverse Opposite:
C A G T A T C G A T G C G T A C G T C A C T G A A T C G A C G T G A T C A G T C A G T C T G C A
p-value:1e-9
log p-value:-2.273e+01
Information Content per bp:1.764
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.96%
Number of Background Sequences with motif228.5
Percentage of Background Sequences with motif0.46%
Average Position of motif in Targets105.5 +/- 54.0bp
Average Position of motif in Background103.6 +/- 54.3bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.2/Jaspar

Match Rank:1
Score:0.69
Offset:3
Orientation:forward strand
Alignment:TGGGACTTGGCA--
---TACTTGGCAGA
 A C G T A C T G A C T G C A T G G T C A T A G C G A C T A C G T A C T G A T C G T A G C G T C A A C G T A C G T
A C G T A C G T A C G T G A C T G C T A T G A C A C G T G C A T T C A G C A T G G A T C C G T A A T C G C G T A

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:TGGGACTTGGCA--
-----NTTGGCANN
 A C G T A C T G A C T G C A T G G T C A T A G C G A C T A C G T A C T G A T C G T A G C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:TGGGACTTGGCA--
----NNTTGGCANN
 A C G T A C T G A C T G C A T G G T C A T A G C G A C T A C G T A C T G A T C G T A G C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:TGGGACTTGGCA-
-----CTTGGCAA
 A C G T A C T G A C T G C A T G G T C A T A G C G A C T A C G T A C T G A T C G T A G C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

CREB3L1/MA0839.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGGGACTTGGCA-
TGATGACGTGGCAN
 A C G T A C G T A C T G A C T G C A T G G T C A T A G C G A C T A C G T A C T G A T C G T A G C G T C A A C G T
G A C T C T A G T C G A G A C T A C T G G C T A A G T C A T C G A G C T C T A G C A T G G A T C C T G A A G C T

HES7/MA0822.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGGGACTTGGCA
TGGCACGTGCCA
 A C G T A C T G A C T G C A T G G T C A T A G C G A C T A C G T A C T G A T C G T A G C G T C A
G A C T T A C G C T A G A G T C C G T A A G T C A C T G A G C T C T A G A G T C A G T C C T G A

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TGGGACTTGGCA-
----GGTTGGCAT
 A C G T A C T G A C T G C A T G G T C A T A G C G A C T A C G T A C T G A T C G T A G C G T C A A C G T
A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

HES5/MA0821.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGGGACTTGGCA
TGGCACGTGCCG
 A C G T A C T G A C T G C A T G G T C A T A G C G A C T A C G T A C T G A T C G T A G C G T C A
G A C T T C A G T C A G A G T C C T G A A G T C C A T G A G C T A C T G A G T C A G T C C T A G

PB0200.1_Zfp187_2/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGGGACTTGGCA--
NNAGGGACAAGGGCNC
 A C G T A C G T A C G T A C T G A C T G C A T G G T C A T A G C G A C T A C G T A C T G A T C G T A G C G T C A A C G T A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

CREB3/MA0638.1/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGGGACTTGGCA-
NGATGACGTGGCAN
 A C G T A C G T A C T G A C T G C A T G G T C A T A G C G A C T A C G T A C T G A T C G T A G C G T C A A C G T
A G C T C A T G T C G A G A C T A C T G C G T A G A T C A C T G C G A T A T C G C A T G G T A C T C G A A G T C