Information for 5-GGGCCAAGGTGT (Motif 6)

A C T G A C T G C T A G A T G C A G T C C G T A C G T A A T C G A C T G C A G T A C T G A C G T
Reverse Opposite:
G T C A A G T C G C T A A G T C A T G C A C G T A C G T A C T G A T C G A G T C A G T C A G T C
p-value:1e-9
log p-value:-2.206e+01
Information Content per bp:1.891
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif18.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets62.8 +/- 31.3bp
Average Position of motif in Background68.6 +/- 54.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXRA::VDR/MA0074.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GGGCCAAGGTGT---
GGGTCAACGAGTTCA
 A C T G A C T G C T A G A T G C A G T C C G T A C G T A A T C G A C T G C A G T A C T G A C G T A C G T A C G T A C G T
C T A G A C T G A C T G A C G T A G T C C T G A G C A T A G T C C T A G C T A G A C T G A C G T C G A T A G T C T C G A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGGCCAAGGTGT
AGGTCAAGGTCA
 A C T G A C T G C T A G A T G C A G T C C G T A C G T A A T C G A C T G C A G T A C T G A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

TBX5/MA0807.1/Jaspar

Match Rank:3
Score:0.63
Offset:6
Orientation:forward strand
Alignment:GGGCCAAGGTGT--
------AGGTGTGA
 A C T G A C T G C T A G A T G C A G T C C G T A C G T A A T C G A C T G C A G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A

TBX4/MA0806.1/Jaspar

Match Rank:4
Score:0.61
Offset:6
Orientation:forward strand
Alignment:GGGCCAAGGTGT--
------AGGTGTGA
 A C T G A C T G C T A G A T G C A G T C C G T A C G T A A T C G A C T G C A G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A

PB0117.1_Eomes_2/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GGGCCAAGGTGT------
--GCGGAGGTGTCGCCTC
 A C T G A C T G C T A G A T G C A G T C C G T A C G T A A T C G A C T G C A G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

PLAG1/MA0163.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGGCCAAGGTGT
GGGGCCCAAGGGGG
 A C G T A C G T A C T G A C T G C T A G A T G C A G T C C G T A C G T A A T C G A C T G C A G T A C T G A C G T
A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GGGCCAAGGTGT
CGTGCCAAG----
 A C G T A C T G A C T G C T A G A T G C A G T C C G T A C G T A A T C G A C T G C A G T A C T G A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

PB0200.1_Zfp187_2/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GGGCCAAGGTGT-
NNAGGGACAAGGGCNC
 A C G T A C G T A C G T A C T G A C T G C T A G A T G C A G T C C G T A C G T A A T C G A C T G C A G T A C T G A C G T A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

NFY(CCAAT)/Promoter/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGGCCAAGGTGT
-AGCCAATCGG-
 A C T G A C T G C T A G A T G C A G T C C G T A C G T A A T C G A C T G C A G T A C T G A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

TBX2/MA0688.1/Jaspar

Match Rank:10
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GGGCCAAGGTGT----
-----AAGGTGTGAAA
 A C T G A C T G C T A G A T G C A G T C C G T A C G T A A T C G A C T G C A G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A