Information for 4-CTCTACAGAC (Motif 9)

A G T C A C G T A G T C G C A T C T G A G T A C C G T A A T C G C G T A A T G C
Reverse Opposite:
T A C G C G A T A T G C C G A T A C T G G A C T C G T A C T A G C G T A C T A G
p-value:1e-8
log p-value:-1.963e+01
Information Content per bp:1.833
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.96%
Number of Background Sequences with motif274.6
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets107.2 +/- 60.1bp
Average Position of motif in Background99.2 +/- 54.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CTCTACAGAC----
----CCAGACRSVB
 A G T C A C G T A G T C G C A T C T G A G T A C C G T A A T C G C G T A A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CTCTACAGAC--
----CCAGACAG
 A G T C A C G T A G T C G C A T C T G A G T A C C G T A A T C G C G T A A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CTCTACAGAC--
----BCAGACWA
 A G T C A C G T A G T C G C A T C T G A G T A C C G T A A T C G C G T A A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTCTACAGAC------
CAAATCCAGACATCACA
 A C G T A G T C A C G T A G T C G C A T C T G A G T A C C G T A A T C G C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.54
Offset:-9
Orientation:forward strand
Alignment:---------CTCTACAGAC-
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C G C A T C T G A G T A C C G T A A T C G C G T A A T G C A C G T
G A C T A G C T A G C T G A C T G A C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G G C A T C G A T

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CTCTACAGAC
---CACAGN-
 A G T C A C G T A G T C G C A T C T G A G T A C C G T A A T C G C G T A A T G C
A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

Smad4/MA1153.1/Jaspar

Match Rank:7
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CTCTACAGAC-
---TCTAGACA
 A G T C A C G T A G T C G C A T C T G A G T A C C G T A A T C G C G T A A T G C A C G T
A C G T A C G T A C G T A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CTCTACAGAC
NSCACTYVAV--
 A C G T A C G T A G T C A C G T A G T C G C A T C T G A G T A C C G T A A T C G C G T A A T G C
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.53
Offset:-9
Orientation:forward strand
Alignment:---------CTCTACAGAC-
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C G C A T C T G A G T A C C G T A A T C G C G T A A T G C A C G T
G A C T G A C T A G C T A G C T A G C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G C G A T C G A T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CTCTACAGAC
RSCACTYRAG--
 A C G T A C G T A G T C A C G T A G T C G C A T C T G A G T A C C G T A A T C G C G T A A T G C
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T