Information for 9-TGCAAGTS (Motif 16)

A C G T A C T G A G T C C G T A G T C A A C T G A C G T A T C G
Reverse Opposite:
A T G C C G T A A G T C A C G T A C G T A C T G A G T C C G T A
p-value:1e-9
log p-value:-2.130e+01
Information Content per bp:1.927
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif11.35%
Number of Background Sequences with motif698.7
Percentage of Background Sequences with motif1.51%
Average Position of motif in Targets103.6 +/- 56.9bp
Average Position of motif in Background104.3 +/- 71.0bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TGCAAGTS-
AAGGCAAGTGT
 A C G T A C G T A C G T A C T G A G T C C G T A G T C A A C T G A C G T A T C G A C G T
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

PRDM1/MA0508.2/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-TGCAAGTS-
GTGAAAGTGA
 A C G T A C G T A C T G A G T C C G T A G T C A A C T G A C G T A T C G A C G T
C T A G C G A T A C T G C G T A G C T A G T C A C T A G A G C T C T A G C G T A

HIF1A/MA1106.1/Jaspar

Match Rank:3
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TGCAAGTS-
NNGCACGTNC
 A C G T A C G T A C T G A G T C C G T A G T C A A C T G A C G T A T C G A C G T
T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TGCAAGTS--
ATATGCAAATNNN
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A G T C A A C T G A C G T A T C G A C G T A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer

Match Rank:5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TGCAAGTS
TATGCAAATC
 A C G T A C G T A C G T A C T G A G T C C G T A G T C A A C T G A C G T A T C G
G A C T C G T A C A G T A C T G A G T C C G T A C G T A C G T A C A G T T G A C

NKX2-8/MA0673.1/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TGCAAGTS-
NTCAAGTGG
 A C G T A C T G A G T C C G T A G T C A A C T G A C G T A T C G A C G T
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TGCAAGTS
ATATGCAAAT-
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A G T C A A C T G A C G T A T C G
G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGCAAGTS--
NTCAAGTGGN
 A C G T A C T G A G T C C G T A G T C A A C T G A C G T A T C G A C G T A C G T
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TGCAAGTS
TTATGCAAAT-
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A G T C A A C T G A C G T A T C G
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T

Npas2/MA0626.1/Jaspar

Match Rank:10
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TGCAAGTS--
GGCACGTGTC
 A C G T A C T G A G T C C G T A G T C A A C T G A C G T A T C G A C G T A C G T
C T A G T A C G A G T C C G T A G T A C C T A G A C G T C T A G A C G T G T A C