Information for 7-ATCAACCCGAGT (Motif 3)

C G T A G A C T G T A C G T C A C G T A G A T C G A T C G A T C A T C G C G T A C T A G A C G T
Reverse Opposite:
C G T A A G T C G A C T A T G C C A T G C T A G C A T G C G A T A C G T A C T G C G T A C G A T
p-value:1e-165
log p-value:-3.819e+02
Information Content per bp:1.915
Number of Target Sequences with motif69.0
Percentage of Target Sequences with motif19.71%
Number of Background Sequences with motif11.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets95.7 +/- 59.1bp
Average Position of motif in Background60.9 +/- 5.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.41
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0016.1_Cux1_1/Jaspar

Match Rank:1
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------ATCAACCCGAGT
TNAGNTGATCAACCGGT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T G T A C G T C A C G T A G A T C G A T C G A T C A T C G C G T A C T A G A C G T
G A C T T A G C G C T A A T C G C A T G C G A T C T A G C G T A A G C T G A T C C G T A C T G A A G T C A G T C C T A G T A C G G A C T A C G T A C G T

VDR/MA0693.2/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:ATCAACCCGAGT
-TGAACTCA---
 C G T A G A C T G T A C G T C A C G T A G A T C G A T C G A T C A T C G C G T A C T A G A C G T
A C G T A G C T C T A G G T C A T G C A T G A C G A C T A G T C C T G A A C G T A C G T A C G T

PBX1/MA0070.1/Jaspar

Match Rank:3
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--ATCAACCCGAGT
CCATCAATCAAA--
 A C G T A C G T C G T A G A C T G T A C G T C A C G T A G A T C G A T C G A T C A T C G C G T A C T A G A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T

CLOCK/MA0819.1/Jaspar

Match Rank:4
Score:0.52
Offset:3
Orientation:forward strand
Alignment:ATCAACCCGAGT-
---AACACGTGTT
 C G T A G A C T G T A C G T C A C G T A G A T C G A T C G A T C A T C G C G T A C T A G A C G T A C G T
A C G T A C G T A C G T C T G A T C G A G T A C T C G A G A T C C T A G A C G T A C T G A G C T G A C T

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---ATCAACCCGAGT
CCAATCAA-------
 A C G T A C G T A C G T C G T A G A C T G T A C G T C A C G T A G A T C G A T C G A T C A T C G C G T A C T A G A C G T
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:6
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----ATCAACCCGAGT
HNRAATCAAT------
 A C G T A C G T A C G T A C G T C G T A G A C T G T A C G T C A C G T A G A T C G A T C G A T C A T C G C G T A C T A G A C G T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

SIX1/MA1118.1/Jaspar

Match Rank:7
Score:0.51
Offset:1
Orientation:forward strand
Alignment:ATCAACCCGAGT
-GTAACCTGATA
 C G T A G A C T G T A C G T C A C G T A G A T C G A T C G A T C A T C G C G T A C T A G A C G T
A C G T C A T G C G A T G C T A C G T A G A T C G T A C G C A T C T A G C G T A A C G T G T C A

PB0024.1_Gcm1_1/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:forward strand
Alignment:ATCAACCCGAGT----
TCGTACCCGCATCATT
 C G T A G A C T G T A C G T C A C G T A G A T C G A T C G A T C A T C G C G T A C T A G A C G T A C G T A C G T A C G T A C G T
G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T

Arid3a/MA0151.1/Jaspar

Match Rank:9
Score:0.51
Offset:0
Orientation:forward strand
Alignment:ATCAACCCGAGT
ATTAAA------
 C G T A G A C T G T A C G T C A C G T A G A T C G A T C G A T C A T C G C G T A C T A G A C G T
C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:10
Score:0.50
Offset:-7
Orientation:forward strand
Alignment:-------ATCAACCCGAGT
CGACCCAATCAACGGTG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T G T A C G T C A C G T A G A T C G A T C G A T C A T C G C G T A C T A G A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G A C G T A C G T