Information for 12-CTAGACAGAAGM (Motif 8)

A G T C G C A T C G T A T C A G C T G A G T A C C G T A C T A G C T G A C G T A A C T G G T C A
Reverse Opposite:
C A G T T G A C A C G T G A C T A G T C A C G T C A T G A G C T A G T C C G A T C G T A T C A G
p-value:1e-82
log p-value:-1.903e+02
Information Content per bp:1.743
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif17.14%
Number of Background Sequences with motif102.8
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets98.9 +/- 56.5bp
Average Position of motif in Background92.0 +/- 60.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4/MA1153.1/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CTAGACAGAAGM
TCTAGACA-----
 A C G T A G T C G C A T C G T A T C A G C T G A G T A C C G T A C T A G C T G A C G T A A C T G G T C A
A C G T A G T C A G C T C G T A A C T G C G T A A G T C C T G A A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----CTAGACAGAAGM
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A G T C G C A T C G T A T C A G C T G A G T A C C G T A C T A G C T G A C G T A A C T G G T C A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CTAGACAGAAGM
CCAGACAG----
 A G T C G C A T C G T A T C A G C T G A G T A C C G T A C T A G C T G A C G T A A C T G G T C A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTAGACAGAAGM
BCAGACWA----
 A G T C G C A T C G T A T C A G C T G A G T A C C G T A C T A G C T G A C G T A A C T G G T C A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CTAGACAGAAGM
CGTCTAGACA-----
 A C G T A C G T A C G T A G T C G C A T C G T A T C A G C T G A G T A C C G T A C T A G C T G A C G T A A C T G G T C A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTAGACAGAAGM--
AAACAGACAAAGGAAT
 A C G T A C G T A G T C G C A T C G T A T C A G C T G A G T A C C G T A C T A G C T G A C G T A A C T G G T C A A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTAGACAGAAGM
-AAAACAAAGG-
 A G T C G C A T C G T A T C A G C T G A G T A C C G T A C T A G C T G A C G T A A C T G G T C A
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTAGACAGAAGM
-TTGACAG----
 A G T C G C A T C G T A T C A G C T G A G T A C C G T A C T A G C T G A C G T A A C T G G T C A
A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T

SOX15/MA1152.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTAGACAGAAGM
-AAAACAATAG-
 A G T C G C A T C G T A T C A G C T G A G T A C C G T A C T A G C T G A C G T A A C T G G T C A
A C G T C G T A C T G A C T G A G C T A A G T C C G T A G T C A G C A T C T G A T C A G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTAGACAGAAGM
CCAGACRSVB--
 A G T C G C A T C G T A T C A G C T G A G T A C C G T A C T A G C T G A C G T A A C T G G T C A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T