Information for 2-CATTTTTCTAGT (Motif 2)

A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G A T G T C A A C T G A C G T
Reverse Opposite:
C G T A A G T C A C G T C G T A A C T G C G T A C G T A C G T A C G T A C G T A A C G T A C T G
p-value:1e-20
log p-value:-4.643e+01
Information Content per bp:1.950
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets90.8 +/- 55.2bp
Average Position of motif in Background56.0 +/- 34.2bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.42
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CATTTTTCTAGT-
TTTTTTTTCNNGTN
 A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G A T G T C A A C T G A C G T A C G T
G A C T G C A T C A G T C G A T A G C T A G C T G C A T G C A T A G T C T G A C G T C A A C T G G A C T C G T A

PB0148.1_Mtf1_2/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CATTTTTCTAGT--
NNTTTTTCTTATNT
 A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G A T G T C A A C T G A C G T A C G T A C G T
A C T G G C A T A C G T C G A T C G A T C G A T C A G T G T A C C G A T C G A T G T C A C G A T G C A T C A G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CATTTTTCTAGT
NCCATTGTTC----
 A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G A T G T C A A C T G A C G T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CATTTTTCTAGT
CCATTGTTYB---
 A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G A T G T C A A C T G A C G T
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CATTTTTCTAGT
NNTTTATTGTTCTNNN
 A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G A T G T C A A C T G A C G T
G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

PB0062.1_Sox12_1/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CATTTTTCTAGT-
TAATTGTTCTAAAC
 A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G A T G T C A A C T G A C G T A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

Sox6/MA0515.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CATTTTTCTAGT
CCATTGTTTT---
 A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G A T G T C A A C T G A C G T
A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CATTTTTCTAGT------
-NANTTTCAAGTGGTTAN
 A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G A T G T C A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

PB0061.1_Sox11_1/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CATTTTTCTAGT
NNNTCCTTTGTTCTNNN
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G A T G T C A A C T G A C G T
C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

PB0067.1_Sox18_1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CATTTTTCTAGT-
TTCAATTGTTCTAAAA
 A C G T A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A G T C C G A T G T C A A C T G A C G T A C G T
A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A