Information for 7-RKTWGCHRKG (Motif 11)

C T A G A C G T C G A T C G A T C T A G G T A C G T A C C T A G A C G T C A T G
Reverse Opposite:
G T A C G T C A G A T C C A T G A C T G G A T C G C T A C G T A T G C A G A T C
p-value:1e-13
log p-value:-3.164e+01
Information Content per bp:1.616
Number of Target Sequences with motif306.0
Percentage of Target Sequences with motif25.48%
Number of Background Sequences with motif8097.0
Percentage of Background Sequences with motif16.79%
Average Position of motif in Targets104.0 +/- 49.2bp
Average Position of motif in Background99.9 +/- 63.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.63
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-RKTWGCHRKG-
CTGTTGCTAGGS
 A C G T C T A G A C G T C G A T C G A T C T A G G T A C G T A C C T A G A C G T C A T G A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--RKTWGCHRKG---
NNCGTTGCTATGGNN
 A C G T A C G T C T A G A C G T C G A T C G A T C T A G G T A C G T A C C T A G A C G T C A T G A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--RKTWGCHRKG---
NCCGTTGCTANGNGN
 A C G T A C G T C T A G A C G T C G A T C G A T C T A G G T A C G T A C C T A G A C G T C A T G A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.68
Offset:-6
Orientation:reverse strand
Alignment:------RKTWGCHRKG-------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T C G A T C G A T C T A G G T A C G T A C C T A G A C G T C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:RKTWGCHRKG-----
-GTTGCCATGGNAAC
 C T A G A C G T C G A T C G A T C T A G G T A C G T A C C T A G A C G T C A T G A C G T A C G T A C G T A C G T A C G T
A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:6
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:RKTWGCHRKG-----
KGTTGCTAGGMAACA
 C T A G A C G T C G A T C G A T C T A G G T A C G T A C C T A G A C G T C A T G A C G T A C G T A C G T A C G T A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

PB0155.1_Osr2_2/Jaspar

Match Rank:7
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------RKTWGCHRKG
NNTGTAGGTAGCANNT
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T C G A T C G A T C T A G G T A C G T A C C T A G A C G T C A T G
A C T G C T A G C G A T C A T G A G C T C G T A C T A G A C T G C G A T C T G A T A C G A G T C C T G A C T G A C T A G G A C T

PB0051.1_Osr2_1/Jaspar

Match Rank:8
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------RKTWGCHRKG
ATGTACAGTAGCAAAG
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T C G A T C G A T C T A G G T A C G T A C C T A G A C G T C A T G
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:RKTWGCHRKG----
GGTTGCCATGGCAA
 C T A G A C G T C G A T C G A T C T A G G T A C G T A C C T A G A C G T C A T G A C G T A C G T A C G T A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:RKTWGCHRKG----
NGTTGCCATGGCAA
 C T A G A C G T C G A T C G A T C T A G G T A C G T A C C T A G A C G T C A T G A C G T A C G T A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A