Information for 9-TTTATGTACAGT (Motif 13)

A C G T A C G T A C G T C G T A A C G T A C T G A G C T G T C A A G T C T C G A A C T G A C G T
Reverse Opposite:
C G T A A G T C A C G T A C T G A C G T C T G A A G T C C G T A A C G T C G T A C G T A C G T A
p-value:1e-12
log p-value:-2.877e+01
Information Content per bp:1.965
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets88.2 +/- 58.0bp
Average Position of motif in Background144.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.7
Multiplicity (# of sites on avg that occur together)2.83
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIL3/MA0025.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TTTATGTACAGT
-TTATGTAACAT
 A C G T A C G T A C G T C G T A A C G T A C T G A G C T G T C A A G T C T C G A A C T G A C G T
A C G T C G A T A C G T C G T A A G C T C T A G A C G T C G T A C T G A A G T C T C A G G A C T

PB0015.1_Foxa2_1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TTTATGTACAGT--
NNNTTTGTTTACTTTTN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G C T G T C A A G T C T C G A A C T G A C G T A C G T A C G T
T A C G G A C T A T G C C G A T C G A T C G A T C T A G C G A T C A G T C A G T C T G A A G T C G C A T G C A T C G A T C G A T C G A T

PB0019.1_Foxl1_1/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTTATGTACAGT--
NNNTTTGTTTACATTTN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G C T G T C A A G T C T C G A A C T G A C G T A C G T A C G T
T G C A A G T C A T G C G C A T C G A T C G A T C T A G A G C T C G A T A C G T C G T A G A T C C G T A G C A T C G A T G C A T G C T A

PB0018.1_Foxk1_1/Jaspar

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TTTATGTACAGT--
NNNTTTGTTTACATTTN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G C T G T C A A G T C T C G A A C T G A C G T A C G T A C G T
T A G C A G C T A T C G G C A T C G A T A C G T C T A G A C G T C G A T A C G T C G T A A G T C G T C A G C A T G C A T G A C T G C A T

PB0016.1_Foxj1_1/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TTTATGTACAGT
NNNNTTTGTTTACNNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G C T G T C A A G T C T C G A A C T G A C G T
G T C A G T C A G C A T C A G T G C A T C A G T C G A T C T A G C G A T C G A T C A G T C T G A A G T C C G A T G C A T C G A T

Foxj3/MA0851.1/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTTATGTACAGT--
NNNTTTGTTTACNTTNN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G C T G T C A A G T C T C G A A C T G A C G T A C G T A C G T
C A T G A C G T A T C G C G A T C G A T C G A T C T A G C G A T C G A T A C G T C T G A A G T C G A C T G C A T C A G T G A C T C A G T

PB0017.1_Foxj3_1/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTTATGTACAGT--
NNNTTTGTTTACNTTNN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G C T G T C A A G T C T C G A A C T G A C G T A C G T A C G T
C A T G A C G T A T C G C G A T C G A T C G A T C T A G C G A T C G A T A C G T C T G A A G T C G A C T G C A T C A G T G A C T C A G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTTATGTACAGT
DGWTTTATGRCN---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G C T G T C A A G T C T C G A A C T G A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T A C G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TTTATGTACAGT-
-TTATGCAAATTA
 A C G T A C G T A C G T C G T A A C G T A C T G A G C T G T C A A G T C T C G A A C T G A C G T A C G T
A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TTTATGTACAGT
TTTTATGGCM---
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G C T G T C A A G T C T C G A A C T G A C G T
C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C A C G T A C G T A C G T