Information for 12-ATAGCAAGCAAT (Motif 20)

C G T A A C G T G C T A A C T G A G T C C G T A C G T A A C T G A T G C C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T T A C G A G T C A C G T A C G T A C T G A G T C C G A T C G T A A C G T
p-value:1e-10
log p-value:-2.328e+01
Information Content per bp:1.943
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets105.7 +/- 58.9bp
Average Position of motif in Background35.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)3.2
Multiplicity (# of sites on avg that occur together)4.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:ATAGCAAGCAAT
-TBGCACGCAA-
 C G T A A C G T G C T A A C T G A G T C C G T A C G T A A C T G A T G C C G T A C G T A A C G T
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----ATAGCAAGCAAT
TACCATAGCAACGGT-
 A C G T A C G T A C G T A C G T C G T A A C G T G C T A A C T G A G T C C G T A C G T A A C T G A T G C C G T A C G T A A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----ATAGCAAGCAAT
CCGCATAGCAACGGA-
 A C G T A C G T A C G T A C G T C G T A A C G T G C T A A C T G A G T C C G T A C G T A A C T G A T G C C G T A C G T A A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.59
Offset:-8
Orientation:forward strand
Alignment:--------ATAGCAAGCAAT---
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T G C T A A C T G A G T C C G T A C G T A A C T G A T G C C G T A C G T A A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:forward strand
Alignment:ATAGCAAGCAAT
--HNRAATCAAT
 C G T A A C G T G C T A A C T G A G T C C G T A C G T A A C T G A T G C C G T A C G T A A C G T
A C G T A C G T G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-ATAGCAAGCAAT--
ATTTGCATACAATGG
 A C G T C G T A A C G T G C T A A C T G A G T C C G T A C G T A A C T G A T G C C G T A C G T A A C G T A C G T A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

Dux/MA0611.1/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:ATAGCAAGCAAT
---CCAATCAA-
 C G T A A C G T G C T A A C T G A G T C C G T A C G T A A C T G A T G C C G T A C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T

Hmx1/MA0896.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:ATAGCAAGCAAT--------
---ACAAGCAATTAATGAAT
 C G T A A C G T G C T A A C T G A G T C C G T A C G T A A C T G A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

PH0041.1_Hmx1/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:ATAGCAAGCAAT--------
---ACAAGCAATTAATGAAT
 C G T A A C G T G C T A A C T G A G T C C G T A C G T A A C T G A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A T A G C T G C A C T G A T C A G G A T C C T G A G T C A A C G T G A C T C G T A C G T A C G A T T A C G T G C A C G T A A C G T

Sox5/MA0087.1/Jaspar

Match Rank:10
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:ATAGCAAGCAAT
-----NAACAAT
 C G T A A C G T G C T A A C T G A G T C C G T A C G T A A C T G A T G C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T