Information for 9-SCWDTMRT (Motif 24)

A T G C G T A C C G T A C T G A A G C T G T C A T C A G G A C T
Reverse Opposite:
C T G A A G T C C A G T T C G A G A C T G C A T C A T G T A C G
p-value:1e-8
log p-value:-1.979e+01
Information Content per bp:1.463
Number of Target Sequences with motif143.0
Percentage of Target Sequences with motif11.91%
Number of Background Sequences with motif3448.4
Percentage of Background Sequences with motif7.15%
Average Position of motif in Targets100.4 +/- 50.6bp
Average Position of motif in Background99.2 +/- 61.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA5/MA0158.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:SCWDTMRT-
-CACTAATT
 A T G C G T A C C G T A C T G A A G C T G T C A T C A G G A C T A C G T
A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:SCWDTMRT---
-CCATTGTTNY
 A T G C G T A C C G T A C T G A A G C T G T C A T C A G G A C T A C G T A C G T A C G T
A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

MF0010.1_Homeobox_class/Jaspar

Match Rank:3
Score:0.61
Offset:2
Orientation:forward strand
Alignment:SCWDTMRT-
--AATAATT
 A T G C G T A C C G T A C T G A A G C T G T C A T C A G G A C T A C G T
A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:SCWDTMRT--
NCCATTGTTC
 A T G C G T A C C G T A C T G A A G C T G T C A T C A G G A C T A C G T A C G T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C

SOX15/MA1152.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:SCWDTMRT---
-CTATTGTTTT
 A T G C G T A C C G T A C T G A A G C T G T C A T C A G G A C T A C G T A C G T A C G T
A C G T A G T C G A C T C G T A A C G T C G A T T C A G C G A T G A C T G A C T G C A T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:SCWDTMRT-
-CCTTTGTT
 A T G C G T A C C G T A C T G A A G C T G T C A T C A G G A C T A C G T
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

NKX6-2/MA0675.1/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:SCWDTMRT---
---TTAATTAN
 A T G C G T A C C G T A C T G A A G C T G T C A T C A G G A C T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--SCWDTMRT-----
NNNCCATTGTGTNAN
 A C G T A C G T A T G C G T A C C G T A C T G A A G C T G T C A T C A G G A C T A C G T A C G T A C G T A C G T A C G T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:SCWDTMRT--
--GKTAATGR
 A T G C G T A C C G T A C T G A A G C T G T C A T C A G G A C T A C G T A C G T
A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A

PB0183.1_Sry_2/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--SCWDTMRT-------
CNNNTATTGTTCNNNNN
 A C G T A C G T A T G C G T A C C G T A C T G A A G C T G T C A T C A G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A