Information for 5-GGGTTCAA (Motif 10)

A C T G A C T G C T A G C G A T C G A T A G T C C G T A G T C A
Reverse Opposite:
A C G T A C G T A C T G C G T A C G T A A G T C A G T C A G T C
p-value:1e-13
log p-value:-3.160e+01
Information Content per bp:1.920
Number of Target Sequences with motif170.0
Percentage of Target Sequences with motif12.95%
Number of Background Sequences with motif3333.2
Percentage of Background Sequences with motif7.01%
Average Position of motif in Targets97.2 +/- 48.3bp
Average Position of motif in Background100.6 +/- 61.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VDR/MA0693.2/Jaspar

Match Rank:1
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-GGGTTCAA
TGAGTTCA-
 A C G T A C T G A C T G C T A G C G A T C G A T A G T C C G T A G T C A
G A C T T C A G C T G A A C T G A C G T C A G T G A T C C T G A A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:2
Score:0.82
Offset:-5
Orientation:forward strand
Alignment:-----GGGTTCAA----
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C T A G C G A T C G A T A G T C C G T A G T C A A C G T A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

PB0057.1_Rxra_1/Jaspar

Match Rank:3
Score:0.78
Offset:-5
Orientation:reverse strand
Alignment:-----GGGTTCAA----
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C T A G C G A T C G A T A G T C C G T A G T C A A C G T A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

PB0118.1_Esrra_2/Jaspar

Match Rank:4
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----GGGTTCAA----
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C T A G C G A T C G A T A G T C C G T A G T C A A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:5
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GGGTTCAA-
CGGTTTCAAA
 A C G T A C T G A C T G C T A G C G A T C G A T A G T C C G T A G T C A A C G T
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer

Match Rank:6
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GGGTTCAA
CAAAGKTCAA
 A C G T A C G T A C T G A C T G C T A G C G A T C G A T A G T C C G T A G T C A
G A T C G T C A T C G A T C G A C T A G C A T G A G C T G T A C T C G A T C G A

PB0157.1_Rara_2/Jaspar

Match Rank:7
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GGGTTCAA---
AGAGCGGGGTCAAGTA
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G C T A G C G A T C G A T A G T C C G T A G T C A A C G T A C G T A C G T
G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GGGTTCAA
AGRGGTCA-
 A C G T A C T G A C T G C T A G C G A T C G A T A G T C C G T A G T C A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GGGTTCAA
NGGATTAN
 A C T G A C T G C T A G C G A T C G A T A G T C C G T A G T C A
C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer

Match Rank:10
Score:0.66
Offset:-8
Orientation:reverse strand
Alignment:--------GGGTTCAA
NMMNBAAAGGGTTAA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C T A G C G A T C G A T A G T C C G T A G T C A
T A C G T G C A G T C A G C A T A C T G T G C A T C G A C T G A C A T G C T A G A C T G C A G T G A C T C G T A G T C A A C G T