Information for 17-GTCTGWCWGT (Motif 24)

A C T G C G A T G T A C A C G T A C T G C G A T A G T C C G A T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A C T A G C G T A A G T C C G T A A C T G C G T A A G T C
p-value:1e-6
log p-value:-1.507e+01
Information Content per bp:1.862
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif147.1
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets110.9 +/- 60.3bp
Average Position of motif in Background92.8 +/- 53.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GTCTGWCWGT-
TGTCTGDCACCT
 A C G T A C T G C G A T G T A C A C G T A C T G C G A T A G T C C G A T A C T G A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GTCTGWCWGT
VGCTGWCAVB
 A C T G C G A T G T A C A C G T A C T G C G A T A G T C C G A T A C T G A C G T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GTCTGWCWGT
VBSYGTCTGG----
 A C G T A C G T A C G T A C G T A C T G C G A T G T A C A C G T A C T G C G A T A G T C C G A T A C T G A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTCTGWCWGT-
CTGTCTGTCACCT
 A C G T A C G T A C T G C G A T G T A C A C G T A C T G C G A T A G T C C G A T A C T G A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GTCTGWCWGT
--YTGWCADY
 A C T G C G A T G T A C A C G T A C T G C G A T A G T C C G A T A C T G A C G T
A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GTCTGWCWGT
CTGTCTGG----
 A C G T A C G T A C T G C G A T G T A C A C G T A C T G C G A T A G T C C G A T A C T G A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GTCTGWCWGT--
GSCTGTCACTCA
 A C T G C G A T G T A C A C G T A C T G C G A T A G T C C G A T A C T G A C G T A C G T A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GTCTGWCWGT
TWGTCTGV----
 A C G T A C G T A C T G C G A T G T A C A C G T A C T G C G A T A G T C C G A T A C T G A C G T
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:9
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GTCTGWCWGT---
---TGGCAGTTGG
 A C T G C G A T G T A C A C G T A C T G C G A T A G T C C G A T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G

PBX2/MA1113.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GTCTGWCWGT---
-NCTGTCAATCAN
 A C T G C G A T G T A C A C G T A C T G C G A T A G T C C G A T A C T G A C G T A C G T A C G T A C G T
A C G T A T G C T A G C G A C T T C A G G A C T T G A C G T C A T G C A G A C T G T A C G C T A A G T C