Information for 22-GAGAGAGA (Motif 34)

A C T G C G T A A C T G C G T A A C T G C G T A A C T G C G T A
Reverse Opposite:
A C G T A G T C A C G T A G T C A C G T A G T C A C G T A G T C
p-value:1e0
log p-value:-1.643e+00
Information Content per bp:1.530
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif3.05%
Number of Background Sequences with motif1250.4
Percentage of Background Sequences with motif2.63%
Average Position of motif in Targets74.7 +/- 65.5bp
Average Position of motif in Background101.1 +/- 59.6bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0140.1_Irf6_2/Jaspar

Match Rank:1
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------GAGAGAGA-
NNNACCGAGAGTNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GAGAGAGA-----
TTGACCGAGAATTCC
 A C G T A C G T A C T G C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GAGAGAGA-
RHHCAGAGAGGB
 A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T
T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G

PB0114.1_Egr1_2/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GAGAGAGA----
TGCGGAGTGGGACTGG
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGAGA---
AGGTGNCAGACAG
 A C G T A C G T A C T G C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T A C G T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAGAGAGA--
AGGTGHCAGACA
 A C G T A C G T A C T G C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T A C G T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

PBX3/MA1114.1/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GAGAGAGA-----
GGGTGAGTGACAGGCGG
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T A C G T A C G T A C G T A C G T
T A C G A C T G A C T G C G A T T C A G C G T A A C T G C A G T T A C G C T G A T A G C C T G A A C T G T A C G A T G C T C A G A T C G

PB0138.1_Irf4_2/Jaspar

Match Rank:8
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------GAGAGAGA-
GNNACCGAGAATNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGAGA--
GAAAGTGAAAGT
 A C G T A C G T A C T G C G T A A C T G C G T A A C T G C G T A A C T G C G T A A C G T A C G T
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T

ZBTB33/MA0527.1/Jaspar

Match Rank:10
Score:0.56
Offset:-8
Orientation:reverse strand
Alignment:--------GAGAGAGA
NAGNTCTCGCGAGAN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G C G T A A C T G C G T A A C T G C G T A
T A G C T C G A T C A G T C G A A G C T T G A C A G C T A G T C C T A G G A T C A C T G C T G A A C T G T C G A T C A G A C G T