Information for 18-CTGTCGGT (Motif 29)

A G T C A C G T A C T G C G A T A G T C A C T G T C A G A C G T
Reverse Opposite:
T G C A A G T C G T A C A C T G C G T A G T A C C G T A A C T G
p-value:1e-1
log p-value:-3.221e+00
Information Content per bp:1.799
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.24%
Number of Background Sequences with motif1046.5
Percentage of Background Sequences with motif2.23%
Average Position of motif in Targets101.5 +/- 59.9bp
Average Position of motif in Background103.7 +/- 59.3bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.64
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CTGTCGGT
GCTGTG---
 A C G T A G T C A C G T A C T G C G A T A G T C A C T G T C A G A C G T
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCGGT
GCTGTCAA-
 A C G T A G T C A C G T A C T G C G A T A G T C A C T G T C A G A C G T
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CTGTCGGT
VGCTGWCAVB
 A C G T A C G T A G T C A C G T A C T G C G A T A G T C A C T G T C A G A C G T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

PBX2/MA1113.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCGGT---
NCTGTCAATCAN
 A C G T A G T C A C G T A C T G C G A T A G T C A C T G T C A G A C G T A C G T A C G T A C G T
A T G C T A G C G A C T T C A G G A C T T G A C G T C A T G C A G A C T G T A C G C T A A G T C

PH0141.1_Pknox2/Jaspar

Match Rank:5
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------CTGTCGGT--
AAGCACCTGTCAATAT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G A T A G T C A C T G T C A G A C G T A C G T A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

PB0140.1_Irf6_2/Jaspar

Match Rank:6
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CTGTCGGT---
ACCACTCTCGGTCAC
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G A T A G T C A C T G T C A G A C G T A C G T A C G T A C G T
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C

PH0169.1_Tgif1/Jaspar

Match Rank:7
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------CTGTCGGT---
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G A T A G T C A C T G T C A G A C G T A C G T A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CTGTCGGT--
GSCTGTCACTCA
 A C G T A C G T A G T C A C G T A C T G C G A T A G T C A C T G T C A G A C G T A C G T A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

MEIS1/MA0498.2/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTGTCGGT
NTGTCAN-
 A G T C A C G T A C T G C G A T A G T C A C T G T C A G A C G T
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTGTCGGT---
NCTGTCAATCAN
 A C G T A G T C A C G T A C T G C G A T A G T C A C T G T C A G A C G T A C G T A C G T A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A