Information for 1-ACAAATTAGC (Motif 3)

T G C A T G A C G T C A G T C A G T C A C G A T G A C T C T G A C A T G A G T C
Reverse Opposite:
T C A G G T A C G A C T C T G A G C T A C A G T C A G T C A G T A C T G A C G T
p-value:1e-14
log p-value:-3.417e+01
Information Content per bp:1.659
Number of Target Sequences with motif166.0
Percentage of Target Sequences with motif20.67%
Number of Background Sequences with motif5170.0
Percentage of Background Sequences with motif11.00%
Average Position of motif in Targets105.4 +/- 56.6bp
Average Position of motif in Background99.9 +/- 62.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0107.1_Msx2/Jaspar

Match Rank:1
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----ACAAATTAGC---
GAAGACCAATTAGCGCT
 A C G T A C G T A C G T A C G T T G C A T G A C G T C A G T C A G T C A C G A T G A C T C T G A C A T G A G T C A C G T A C G T A C G T
T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

PH0034.1_Gbx2/Jaspar

Match Rank:2
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---ACAAATTAGC----
AGCGCTAATTAGCGATT
 A C G T A C G T A C G T T G C A T G A C G T C A G T C A G T C A C G A T G A C T C T G A C A T G A G T C A C G T A C G T A C G T A C G T
C G T A T A C G T G A C T C A G A T G C A G C T G T C A G C T A C A G T A C G T C T G A T A C G A G T C T A C G C T G A A C G T C A G T

GBX1/MA0889.1/Jaspar

Match Rank:3
Score:0.78
Offset:0
Orientation:forward strand
Alignment:ACAAATTAGC
ACTAATTAGC
 T G C A T G A C G T C A G T C A G T C A C G A T G A C T C T G A C A T G A G T C
T C G A A T G C G A C T T C G A T G C A G A C T G A C T G C T A T A C G A G T C

PH0098.1_Lhx8/Jaspar

Match Rank:4
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---ACAAATTAGC----
ACCCCTAATTAGCGGTG
 A C G T A C G T A C G T T G C A T G A C G T C A G T C A G T C A C G A T G A C T C T G A C A T G A G T C A C G T A C G T A C G T A C G T
G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G

PH0089.1_Isx/Jaspar

Match Rank:5
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---ACAAATTAGC---
ACNNCTAATTAGNNNN
 A C G T A C G T A C G T T G C A T G A C G T C A G T C A G T C A C G A T G A C T C T G A C A T G A G T C A C G T A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

PH0092.1_Lhx2/Jaspar

Match Rank:6
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---ACAAATTAGC----
TAAACTAATTAGTGAAC
 A C G T A C G T A C G T T G C A T G A C G T C A G T C A G T C A C G A T G A C T C T G A C A T G A G T C A C G T A C G T A C G T A C G T
C G A T T G C A G T C A T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A T G G T C A G T C A A T G C

PAX4/MA0068.2/Jaspar

Match Rank:7
Score:0.76
Offset:1
Orientation:forward strand
Alignment:ACAAATTAGC
-CTAATTAG-
 T G C A T G A C G T C A G T C A G T C A C G A T G A C T C T G A C A T G A G T C
A C G T A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G A C G T

PH0155.1_Prrx2/Jaspar

Match Rank:8
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----ACAAATTAGC---
NTTCGCTAATTAGCTNT
 A C G T A C G T A C G T A C G T T G C A T G A C G T C A G T C A G T C A C G A T G A C T C T G A C A T G A G T C A C G T A C G T A C G T
G A C T G C A T G A C T G T A C T C A G G A T C A G C T C T G A C G T A G A C T A G C T C T G A C T A G A G T C C A G T A C G T G C A T

NOTO/MA0710.1/Jaspar

Match Rank:9
Score:0.75
Offset:0
Orientation:forward strand
Alignment:ACAAATTAGC
GCTAATTAGC
 T G C A T G A C G T C A G T C A G T C A C G A T G A C T C T G A C A T G A G T C
T A C G G A T C G C A T G T C A C G T A A C G T C A G T C T G A T C A G A T G C

PH0032.1_Evx2/Jaspar

Match Rank:10
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---ACAAATTAGC----
ANCGCTAATTAGCGGTN
 A C G T A C G T A C G T T G C A T G A C G T C A G T C A G T C A C G A T G A C T C T G A C A T G A G T C A C G T A C G T A C G T A C G T
C G T A T G A C T G A C T A C G T A G C A G C T T G C A C G T A A C G T A C G T C T G A T A C G A G T C C A T G C T A G A C G T T C A G