Information for 4-TTTGGGTACTTT (Motif 5)

A C G T A C G T A G C T A T C G C T A G A C T G A C G T C G T A A T G C A C G T A C G T A C G T
Reverse Opposite:
C G T A C G T A C G T A A T C G A C G T C G T A A G T C A G T C A T G C C T G A C G T A C G T A
p-value:1e-13
log p-value:-3.103e+01
Information Content per bp:1.964
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets97.9 +/- 58.6bp
Average Position of motif in Background85.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.9
Multiplicity (# of sites on avg that occur together)2.83
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--TTTGGGTACTTT---
NATTTAAGTACTTANNA
 A C G T A C G T A C G T A C G T A G C T A T C G C T A G A C T G A C G T C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C T A C G A T G A C T C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T A G G C A T G C T A

PH0116.1_Nkx2-9/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TTTGGGTACTTT---
NATTTAAGTACTTNAAA
 A C G T A C G T A C G T A C G T A G C T A T C G C T A G A C T G A C G T C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTTGGGTACTTT----
TTCNAAGTACTTNNNNN
 A C G T A C G T A C G T A G C T A T C G C T A G A C T G A C G T C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

PH0112.1_Nkx2-3/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TTTGGGTACTTT---
CTTTAAGTACTTAATG
 A C G T A C G T A C G T A G C T A T C G C T A G A C T G A C G T C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T
G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

PB0015.1_Foxa2_1/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTTGGGTACTTT--
NNNTTTGTTTACTTTTN
 A C G T A C G T A C G T A C G T A C G T A G C T A T C G C T A G A C T G A C G T C G T A A T G C A C G T A C G T A C G T A C G T A C G T
T A C G G A C T A T G C C G A T C G A T C G A T C T A G C G A T C A G T C A G T C T G A A G T C G C A T G C A T C G A T C G A T C G A T

Foxj3/MA0851.1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TTTGGGTACTTT--
NNNTTTGTTTACNTTNN
 A C G T A C G T A C G T A C G T A C G T A G C T A T C G C T A G A C T G A C G T C G T A A T G C A C G T A C G T A C G T A C G T A C G T
C A T G A C G T A T C G C G A T C G A T C G A T C T A G C G A T C G A T A C G T C T G A A G T C G A C T G C A T C A G T G A C T C A G T

PB0017.1_Foxj3_1/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TTTGGGTACTTT--
NNNTTTGTTTACNTTNN
 A C G T A C G T A C G T A C G T A C G T A G C T A T C G C T A G A C T G A C G T C G T A A T G C A C G T A C G T A C G T A C G T A C G T
C A T G A C G T A T C G C G A T C G A T C G A T C T A G C G A T C G A T A C G T C T G A A G T C G A C T G C A T C A G T G A C T C A G T

PB0018.1_Foxk1_1/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TTTGGGTACTTT--
NNNTTTGTTTACATTTN
 A C G T A C G T A C G T A C G T A C G T A G C T A T C G C T A G A C T G A C G T C G T A A T G C A C G T A C G T A C G T A C G T A C G T
T A G C A G C T A T C G G C A T C G A T A C G T C T A G A C G T C G A T A C G T C G T A A G T C G T C A G C A T G C A T G A C T G C A T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:9
Score:0.61
Offset:-8
Orientation:forward strand
Alignment:--------TTTGGGTACTTT
ACTYKNATTCGTGNTACTTC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A T C G C T A G A C T G A C G T C G T A A T G C A C G T A C G T A C G T
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C

PB0133.1_Hic1_2/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TTTGGGTACTTT-
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T A C G T A C G T A G C T A T C G C T A G A C T G A C G T C G T A A T G C A C G T A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C