Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 803)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47013)	% of Background Sequences with Motif
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-4	-1.102e+01	0.0070	113.0	14.07%	4447.4	9.46%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-4	-1.088e+01	0.0070	122.0	15.19%	4905.6	10.44%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-3	-7.594e+00	0.0718	143.0	17.81%	6402.4	13.62%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-2	-6.794e+00	0.1199	164.0	20.42%	7645.6	16.27%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-2	-6.767e+00	0.1199	82.0	10.21%	3395.2	7.23%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-2	-6.590e+00	0.1199	131.0	16.31%	5932.2	12.62%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-5.579e+00	0.2309	26.0	3.24%	849.9	1.81%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-2	-4.962e+00	0.3746	34.0	4.23%	1259.7	2.68%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-2	-4.689e+00	0.4374	17.0	2.12%	518.2	1.10%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-1	-4.027e+00	0.7628	138.0	17.19%	6798.6	14.47%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-3.997e+00	0.7628	40.0	4.98%	1646.4	3.50%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.726e+00	0.8593	33.0	4.11%	1333.0	2.84%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-3.634e+00	0.8694	89.0	11.08%	4238.1	9.02%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.531e+00	0.8951	96.0	11.96%	4634.1	9.86%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-3.431e+00	0.9232	39.0	4.86%	1666.3	3.55%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e-1	-3.340e+00	0.9484	59.0	7.35%	2707.1	5.76%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-1	-3.335e+00	0.9484	132.0	16.44%	6638.2	14.13%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e-1	-3.304e+00	0.9484	222.0	27.65%	11669.8	24.83%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.267e+00	0.9484	7.0	0.87%	181.7	0.39%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-1	-3.240e+00	0.9484	295.0	36.74%	15847.2	33.72%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-3.007e+00	1.0000	17.0	2.12%	635.4	1.35%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-3.000e+00	1.0000	300.0	37.36%	16223.1	34.52%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-2.993e+00	1.0000	74.0	9.22%	3566.3	7.59%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e-1	-2.967e+00	1.0000	42.0	5.23%	1884.3	4.01%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-2.888e+00	1.0000	38.0	4.73%	1690.0	3.60%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-2.766e+00	1.0000	11.0	1.37%	377.2	0.80%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-2.713e+00	1.0000	15.0	1.87%	566.7	1.21%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-2.711e+00	1.0000	6.0	0.75%	165.0	0.35%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-1	-2.664e+00	1.0000	300.0	37.36%	16355.9	34.81%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-2.655e+00	1.0000	161.0	20.05%	8447.5	17.98%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-2.521e+00	1.0000	42.0	5.23%	1956.6	4.16%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-2.490e+00	1.0000	15.0	1.87%	586.8	1.25%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-2.449e+00	1.0000	239.0	29.76%	12943.4	27.54%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-2.448e+00	1.0000	32.0	3.99%	1446.1	3.08%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-1	-2.399e+00	1.0000	20.0	2.49%	841.6	1.79%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-2.389e+00	1.0000	53.0	6.60%	2565.5	5.46%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-2.318e+00	1.0000	30.0	3.74%	1362.6	2.90%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.299e+00	1.0000	51.0	6.35%	2476.6	5.27%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.298e+00	1.0000	25.0	3.11%	1107.6	2.36%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.226e+00	1.0000	18.0	2.24%	761.2	1.62%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-2.196e+00	1.0000	70.0	8.72%	3530.4	7.51%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-2.196e+00	1.0000	114.0	14.20%	5965.7	12.70%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.196e+00	1.0000	65.0	8.09%	3257.0	6.93%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.194e+00	1.0000	52.0	6.48%	2552.4	5.43%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.192e+00	1.0000	115.0	14.32%	6022.8	12.82%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-2.188e+00	1.0000	126.0	15.69%	6639.6	14.13%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.157e+00	1.0000	2.0	0.25%	34.1	0.07%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.136e+00	1.0000	12.0	1.49%	474.8	1.01%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-2.093e+00	1.0000	58.0	7.22%	2900.4	6.17%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.088e+00	1.0000	78.0	9.71%	3998.0	8.51%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-2.051e+00	1.0000	7.0	0.87%	244.9	0.52%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.997e+00	1.0000	44.0	5.48%	2162.8	4.60%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-1.973e+00	1.0000	69.0	8.59%	3533.3	7.52%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.954e+00	1.0000	67.0	8.34%	3428.5	7.30%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-1.859e+00	1.0000	75.0	9.34%	3897.4	8.29%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.816e+00	1.0000	34.0	4.23%	1660.3	3.53%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.734e+00	1.0000	22.0	2.74%	1034.5	2.20%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.722e+00	1.0000	24.0	2.99%	1142.7	2.43%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.719e+00	1.0000	3.0	0.37%	85.5	0.18%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.680e+00	1.0000	13.0	1.62%	572.6	1.22%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.635e+00	1.0000	9.0	1.12%	374.3	0.80%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.596e+00	1.0000	24.0	2.99%	1164.4	2.48%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.579e+00	1.0000	5.0	0.62%	183.3	0.39%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.562e+00	1.0000	57.0	7.10%	2983.9	6.35%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.546e+00	1.0000	14.0	1.74%	641.1	1.36%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.545e+00	1.0000	18.0	2.24%	853.0	1.82%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-1.496e+00	1.0000	48.0	5.98%	2501.6	5.32%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.484e+00	1.0000	28.0	3.49%	1402.5	2.98%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.452e+00	1.0000	49.0	6.10%	2569.0	5.47%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.397e+00	1.0000	37.0	4.61%	1917.8	4.08%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.386e+00	1.0000	43.0	5.35%	2253.8	4.80%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.367e+00	1.0000	324.0	40.35%	18398.3	39.15%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.350e+00	1.0000	82.0	10.21%	4460.7	9.49%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.346e+00	1.0000	70.0	8.72%	3782.3	8.05%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.343e+00	1.0000	2.0	0.25%	58.1	0.12%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.331e+00	1.0000	19.0	2.37%	942.3	2.01%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.329e+00	1.0000	1.0	0.12%	18.0	0.04%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.327e+00	1.0000	37.0	4.61%	1935.4	4.12%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.311e+00	1.0000	17.0	2.12%	837.6	1.78%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.284e+00	1.0000	23.0	2.86%	1170.3	2.49%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.279e+00	1.0000	10.0	1.25%	466.2	0.99%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.270e+00	1.0000	216.0	26.90%	12192.6	25.95%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.258e+00	1.0000	68.0	8.47%	3701.5	7.88%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.257e+00	1.0000	44.0	5.48%	2346.9	4.99%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-1.252e+00	1.0000	4.0	0.50%	158.3	0.34%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.221e+00	1.0000	140.0	17.43%	7836.0	16.68%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.204e+00	1.0000	28.0	3.49%	1465.5	3.12%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.191e+00	1.0000	44.0	5.48%	2366.1	5.04%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.180e+00	1.0000	40.0	4.98%	2144.9	4.56%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.158e+00	1.0000	15.0	1.87%	755.2	1.61%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.151e+00	1.0000	94.0	11.71%	5228.4	11.13%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.137e+00	1.0000	47.0	5.85%	2553.8	5.43%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.111e+00	1.0000	20.0	2.49%	1041.3	2.22%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-1.108e+00	1.0000	68.0	8.47%	3759.8	8.00%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-1.102e+00	1.0000	180.0	22.42%	10212.5	21.73%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.068e+00	1.0000	25.0	3.11%	1331.8	2.83%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.065e+00	1.0000	29.0	3.61%	1557.3	3.31%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.054e+00	1.0000	2.0	0.25%	72.1	0.15%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.053e+00	1.0000	38.0	4.73%	2070.3	4.41%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.025e+00	1.0000	1.0	0.12%	26.7	0.06%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-9.966e-01	1.0000	20.0	2.49%	1067.4	2.27%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-9.912e-01	1.0000	67.0	8.34%	3751.1	7.98%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-9.900e-01	1.0000	8.0	1.00%	398.9	0.85%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-9.853e-01	1.0000	38.0	4.73%	2092.5	4.45%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-9.698e-01	1.0000	36.0	4.48%	1983.5	4.22%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-9.678e-01	1.0000	70.0	8.72%	3934.2	8.37%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-9.619e-01	1.0000	21.0	2.62%	1132.2	2.41%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-9.581e-01	1.0000	58.0	7.22%	3248.8	6.91%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-9.391e-01	1.0000	5.0	0.62%	240.4	0.51%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-9.331e-01	1.0000	35.0	4.36%	1938.2	4.12%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-9.233e-01	1.0000	11.0	1.37%	577.0	1.23%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.107e-01	1.0000	8.0	1.00%	410.2	0.87%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.107e-01	1.0000	8.0	1.00%	410.2	0.87%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-9.091e-01	1.0000	185.0	23.04%	10631.2	22.62%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-9.076e-01	1.0000	178.0	22.17%	10225.1	21.76%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-9.072e-01	1.0000	29.0	3.61%	1603.1	3.41%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-9.000e-01	1.0000	28.0	3.49%	1548.7	3.30%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-8.903e-01	1.0000	38.0	4.73%	2125.3	4.52%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-8.836e-01	1.0000	46.0	5.73%	2588.1	5.51%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-8.511e-01	1.0000	4.0	0.50%	195.6	0.42%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-8.497e-01	1.0000	13.0	1.62%	704.2	1.50%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-8.444e-01	1.0000	73.0	9.09%	4167.9	8.87%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-8.433e-01	1.0000	64.0	7.97%	3646.0	7.76%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-8.418e-01	1.0000	5.0	0.62%	253.0	0.54%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-8.322e-01	1.0000	148.0	18.43%	8533.3	18.16%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-8.202e-01	1.0000	80.0	9.96%	4586.1	9.76%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-8.178e-01	1.0000	33.0	4.11%	1864.0	3.97%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-7.950e-01	1.0000	52.0	6.48%	2973.6	6.33%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-7.918e-01	1.0000	68.0	8.47%	3904.8	8.31%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-7.776e-01	1.0000	71.0	8.84%	4087.0	8.70%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-7.774e-01	1.0000	1.0	0.12%	36.8	0.08%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-7.663e-01	1.0000	61.0	7.60%	3510.5	7.47%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-7.657e-01	1.0000	28.0	3.49%	1592.9	3.39%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-7.607e-01	1.0000	109.0	13.57%	6310.4	13.43%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-7.577e-01	1.0000	1.0	0.12%	37.9	0.08%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-7.547e-01	1.0000	121.0	15.07%	7014.9	14.93%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-7.539e-01	1.0000	12.0	1.49%	668.9	1.42%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-7.487e-01	1.0000	68.0	8.47%	3927.8	8.36%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-7.235e-01	1.0000	142.0	17.68%	8263.2	17.58%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-7.226e-01	1.0000	3.0	0.37%	153.4	0.33%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-7.190e-01	1.0000	46.0	5.73%	2659.9	5.66%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-7.073e-01	1.0000	95.0	11.83%	5528.1	11.76%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-7.067e-01	1.0000	74.0	9.22%	4301.2	9.15%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-7.046e-01	1.0000	7.0	0.87%	388.5	0.83%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-7.029e-01	1.0000	9.0	1.12%	505.5	1.08%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-7.011e-01	1.0000	45.0	5.60%	2609.7	5.55%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-6.979e-01	1.0000	63.0	7.85%	3663.6	7.80%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.950e-01	1.0000	2.0	0.25%	98.7	0.21%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-6.912e-01	1.0000	6.0	0.75%	332.2	0.71%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-6.707e-01	1.0000	235.0	29.27%	13748.6	29.26%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-6.683e-01	1.0000	15.0	1.87%	865.2	1.84%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-6.678e-01	1.0000	108.0	13.45%	6316.5	13.44%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-6.669e-01	1.0000	20.0	2.49%	1159.4	2.47%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-6.476e-01	1.0000	3.0	0.37%	162.7	0.35%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.432e-01	1.0000	4.0	0.50%	222.7	0.47%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.414e-01	1.0000	25.0	3.11%	1462.2	3.11%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-6.319e-01	1.0000	32.0	3.99%	1878.4	4.00%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-6.307e-01	1.0000	9.0	1.12%	521.4	1.11%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-6.259e-01	1.0000	23.0	2.86%	1350.7	2.87%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.211e-01	1.0000	178.0	22.17%	10457.8	22.25%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-6.199e-01	1.0000	20.0	2.49%	1175.5	2.50%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-6.103e-01	1.0000	47.0	5.85%	2772.1	5.90%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-6.012e-01	1.0000	159.0	19.80%	9362.0	19.92%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-5.998e-01	1.0000	58.0	7.22%	3426.1	7.29%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-5.894e-01	1.0000	27.0	3.36%	1601.5	3.41%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-5.669e-01	1.0000	5.0	0.62%	295.1	0.63%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-5.525e-01	1.0000	245.0	30.51%	14457.6	30.77%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-5.469e-01	1.0000	20.0	2.49%	1202.5	2.56%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-5.440e-01	1.0000	24.0	2.99%	1442.9	3.07%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-5.406e-01	1.0000	50.0	6.23%	2989.6	6.36%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-5.388e-01	1.0000	36.0	4.48%	2159.2	4.60%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-5.343e-01	1.0000	87.0	10.83%	5182.1	11.03%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.290e-01	1.0000	42.0	5.23%	2521.2	5.37%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.184e-01	1.0000	25.0	3.11%	1513.5	3.22%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-5.167e-01	1.0000	70.0	8.72%	4190.5	8.92%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-5.121e-01	1.0000	13.0	1.62%	794.0	1.69%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-5.116e-01	1.0000	19.0	2.37%	1156.1	2.46%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-5.088e-01	1.0000	53.0	6.60%	3187.4	6.78%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-5.035e-01	1.0000	52.0	6.48%	3131.2	6.66%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-4.932e-01	1.0000	66.0	8.22%	3970.7	8.45%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-4.920e-01	1.0000	69.0	8.59%	4149.3	8.83%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-4.884e-01	1.0000	5.0	0.62%	311.8	0.66%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-4.815e-01	1.0000	158.0	19.68%	9421.9	20.05%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-4.765e-01	1.0000	37.0	4.61%	2253.7	4.80%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-4.502e-01	1.0000	11.0	1.37%	693.0	1.47%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-4.489e-01	1.0000	5.0	0.62%	321.0	0.68%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.463e-01	1.0000	37.0	4.61%	2271.5	4.83%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.302e-01	1.0000	14.0	1.74%	885.8	1.89%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	-4.293e-01	1.0000	3.0	0.37%	196.4	0.42%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-4.283e-01	1.0000	25.0	3.11%	1557.9	3.32%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.277e-01	1.0000	26.0	3.24%	1618.9	3.45%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-4.235e-01	1.0000	74.0	9.22%	4503.0	9.58%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-4.203e-01	1.0000	5.0	0.62%	327.6	0.70%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-4.124e-01	1.0000	5.0	0.62%	329.4	0.70%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-4.111e-01	1.0000	57.0	7.10%	3496.5	7.44%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-4.056e-01	1.0000	247.0	30.76%	14759.0	31.41%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-4.017e-01	1.0000	49.0	6.10%	3023.9	6.43%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-4.004e-01	1.0000	80.0	9.96%	4881.8	10.39%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-3.987e-01	1.0000	2.0	0.25%	135.2	0.29%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-3.976e-01	1.0000	6.0	0.75%	397.7	0.85%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-3.962e-01	1.0000	92.0	11.46%	5601.7	11.92%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.937e-01	1.0000	4.0	0.50%	269.2	0.57%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-3.935e-01	1.0000	24.0	2.99%	1516.0	3.23%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.854e-01	1.0000	36.0	4.48%	2250.7	4.79%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-3.816e-01	1.0000	2.0	0.25%	138.1	0.29%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-3.657e-01	1.0000	28.0	3.49%	1776.1	3.78%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-3.653e-01	1.0000	20.0	2.49%	1285.2	2.73%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-3.644e-01	1.0000	92.0	11.46%	5634.0	11.99%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-3.595e-01	1.0000	66.0	8.22%	4081.6	8.69%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-3.533e-01	1.0000	50.0	6.23%	3123.0	6.65%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-3.525e-01	1.0000	104.0	12.95%	6364.8	13.54%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-3.505e-01	1.0000	183.0	22.79%	11061.1	23.54%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-3.481e-01	1.0000	14.0	1.74%	921.2	1.96%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-3.455e-01	1.0000	3.0	0.37%	214.5	0.46%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-3.415e-01	1.0000	79.0	9.84%	4880.2	10.39%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-3.400e-01	1.0000	51.0	6.35%	3194.6	6.80%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-3.380e-01	1.0000	48.0	5.98%	3014.8	6.42%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-3.377e-01	1.0000	113.0	14.07%	6919.8	14.73%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-3.364e-01	1.0000	148.0	18.43%	9005.9	19.17%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-3.347e-01	1.0000	257.0	32.00%	15456.9	32.89%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-3.331e-01	1.0000	8.0	1.00%	547.3	1.16%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-3.279e-01	1.0000	6.0	0.75%	419.6	0.89%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-3.277e-01	1.0000	107.0	13.33%	6573.9	13.99%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-3.270e-01	1.0000	70.0	8.72%	4354.1	9.27%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-3.235e-01	1.0000	65.0	8.09%	4056.9	8.63%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-3.222e-01	1.0000	22.0	2.74%	1434.1	3.05%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-3.221e-01	1.0000	4.0	0.50%	288.7	0.61%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-3.128e-01	1.0000	65.0	8.09%	4068.0	8.66%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.105e-01	1.0000	14.0	1.74%	940.8	2.00%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-3.095e-01	1.0000	19.0	2.37%	1255.9	2.67%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-3.080e-01	1.0000	56.0	6.97%	3527.8	7.51%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-3.032e-01	1.0000	9.0	1.12%	624.3	1.33%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.002e-01	1.0000	26.0	3.24%	1697.8	3.61%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-3.001e-01	1.0000	13.0	1.62%	882.2	1.88%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-2.981e-01	1.0000	48.0	5.98%	3050.1	6.49%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-2.963e-01	1.0000	90.0	11.21%	5593.7	11.90%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.952e-01	1.0000	3.0	0.37%	227.4	0.48%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.871e-01	1.0000	12.0	1.49%	825.3	1.76%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-2.829e-01	1.0000	96.0	11.96%	5971.2	12.71%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.812e-01	1.0000	45.0	5.60%	2883.4	6.14%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-2.771e-01	1.0000	2.0	0.25%	160.7	0.34%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-2.765e-01	1.0000	98.0	12.20%	6100.7	12.98%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.718e-01	1.0000	74.0	9.22%	4658.2	9.91%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-2.698e-01	1.0000	40.0	4.98%	2587.1	5.51%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-2.691e-01	1.0000	36.0	4.48%	2341.7	4.98%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.674e-01	1.0000	18.0	2.24%	1219.9	2.60%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-2.650e-01	1.0000	45.0	5.60%	2899.3	6.17%
LXH9(Homeobox)/Hct116-LXH9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-2.637e-01	1.0000	99.0	12.33%	6178.4	13.15%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.591e-01	1.0000	8.0	1.00%	579.7	1.23%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-2.590e-01	1.0000	27.0	3.36%	1791.4	3.81%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.575e-01	1.0000	239.0	29.76%	14532.2	30.93%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.472e-01	1.0000	50.0	6.23%	3225.3	6.86%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-2.433e-01	1.0000	2.0	0.25%	169.1	0.36%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.431e-01	1.0000	3.0	0.37%	243.6	0.52%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-2.431e-01	1.0000	7.0	0.87%	520.3	1.11%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.369e-01	1.0000	39.0	4.86%	2558.2	5.44%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-2.362e-01	1.0000	47.0	5.85%	3053.8	6.50%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-2.361e-01	1.0000	4.0	0.50%	317.7	0.68%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.361e-01	1.0000	4.0	0.50%	317.2	0.68%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.360e-01	1.0000	24.0	2.99%	1622.6	3.45%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.303e-01	1.0000	53.0	6.60%	3429.1	7.30%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.284e-01	1.0000	19.0	2.37%	1311.8	2.79%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.248e-01	1.0000	6.0	0.75%	461.3	0.98%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-2.238e-01	1.0000	68.0	8.47%	4356.7	9.27%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.223e-01	1.0000	5.0	0.62%	394.0	0.84%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.202e-01	1.0000	5.0	0.62%	394.9	0.84%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-2.191e-01	1.0000	38.0	4.73%	2515.6	5.35%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.188e-01	1.0000	13.0	1.62%	931.8	1.98%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.185e-01	1.0000	16.0	1.99%	1126.0	2.40%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-2.185e-01	1.0000	27.0	3.36%	1827.1	3.89%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.163e-01	1.0000	14.0	1.74%	998.6	2.13%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-2.151e-01	1.0000	1.0	0.12%	96.7	0.21%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.126e-01	1.0000	3.0	0.37%	254.8	0.54%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-2.117e-01	1.0000	23.0	2.86%	1580.9	3.36%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-2.078e-01	1.0000	64.0	7.97%	4134.4	8.80%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-2.053e-01	1.0000	58.0	7.22%	3769.8	8.02%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.052e-01	1.0000	23.0	2.86%	1586.4	3.38%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.023e-01	1.0000	12.0	1.49%	877.6	1.87%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-2.018e-01	1.0000	2.0	0.25%	182.2	0.39%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-1.971e-01	1.0000	54.0	6.72%	3534.9	7.52%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.949e-01	1.0000	11.0	1.37%	816.1	1.74%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.912e-01	1.0000	202.0	25.16%	12479.6	26.56%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.887e-01	1.0000	24.0	2.99%	1666.1	3.55%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.879e-01	1.0000	129.0	16.06%	8115.1	17.27%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.828e-01	1.0000	14.0	1.74%	1024.7	2.18%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.789e-01	1.0000	48.0	5.98%	3188.4	6.79%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.769e-01	1.0000	3.0	0.37%	269.7	0.57%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.768e-01	1.0000	28.0	3.49%	1934.4	4.12%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.766e-01	1.0000	32.0	3.99%	2188.1	4.66%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.731e-01	1.0000	9.0	1.12%	697.5	1.48%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-1.729e-01	1.0000	18.0	2.24%	1295.4	2.76%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.717e-01	1.0000	28.0	3.49%	1940.1	4.13%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.691e-01	1.0000	10.0	1.25%	768.3	1.64%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.688e-01	1.0000	23.0	2.86%	1623.8	3.46%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.668e-01	1.0000	26.0	3.24%	1818.4	3.87%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.659e-01	1.0000	42.0	5.23%	2833.0	6.03%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.615e-01	1.0000	5.0	0.62%	425.2	0.90%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.613e-01	1.0000	40.0	4.98%	2713.8	5.78%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.598e-01	1.0000	57.0	7.10%	3777.4	8.04%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.579e-01	1.0000	34.0	4.23%	2339.1	4.98%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.561e-01	1.0000	9.0	1.12%	710.1	1.51%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.522e-01	1.0000	6.0	0.75%	503.3	1.07%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.514e-01	1.0000	2.0	0.25%	202.3	0.43%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.508e-01	1.0000	3.0	0.37%	282.5	0.60%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.467e-01	1.0000	57.0	7.10%	3800.8	8.09%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-1.456e-01	1.0000	91.0	11.33%	5899.9	12.56%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.455e-01	1.0000	128.0	15.94%	8151.1	17.35%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.432e-01	1.0000	95.0	11.83%	6149.4	13.09%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.399e-01	1.0000	1.0	0.12%	119.3	0.25%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.388e-01	1.0000	20.0	2.49%	1463.9	3.12%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.378e-01	1.0000	84.0	10.46%	5487.7	11.68%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.285e-01	1.0000	9.0	1.12%	734.8	1.56%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.265e-01	1.0000	26.0	3.24%	1871.9	3.98%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.197e-01	1.0000	60.0	7.47%	4041.4	8.60%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.152e-01	1.0000	5.0	0.62%	458.4	0.98%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.128e-01	1.0000	149.0	18.56%	9516.6	20.25%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.119e-01	1.0000	2.0	0.25%	223.6	0.48%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.115e-01	1.0000	4.0	0.50%	385.7	0.82%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.114e-01	1.0000	32.0	3.99%	2284.3	4.86%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.104e-01	1.0000	91.0	11.33%	5986.8	12.74%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.070e-01	1.0000	8.0	1.00%	685.3	1.46%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-1.061e-01	1.0000	8.0	1.00%	686.1	1.46%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.046e-01	1.0000	53.0	6.60%	3636.7	7.74%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.043e-01	1.0000	113.0	14.07%	7354.8	15.65%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.034e-01	1.0000	69.0	8.59%	4642.5	9.88%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.032e-01	1.0000	110.0	13.70%	7174.1	15.27%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.025e-01	1.0000	10.0	1.25%	832.1	1.77%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.023e-01	1.0000	32.0	3.99%	2301.4	4.90%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-9.910e-02	1.0000	60.0	7.47%	4090.8	8.71%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-9.849e-02	1.0000	4.0	0.50%	396.5	0.84%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-9.591e-02	1.0000	35.0	4.36%	2508.5	5.34%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-9.403e-02	1.0000	75.0	9.34%	5042.1	10.73%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-8.621e-02	1.0000	42.0	5.23%	2981.1	6.34%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-8.575e-02	1.0000	1.0	0.12%	146.8	0.31%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-8.302e-02	1.0000	52.0	6.48%	3628.8	7.72%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e0	-8.160e-02	1.0000	49.0	6.10%	3441.1	7.32%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-8.030e-02	1.0000	171.0	21.30%	10971.5	23.35%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-7.984e-02	1.0000	24.0	2.99%	1822.1	3.88%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-7.887e-02	1.0000	172.0	21.42%	11038.0	23.49%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-7.856e-02	1.0000	34.0	4.23%	2483.7	5.29%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.753e-02	1.0000	24.0	2.99%	1827.1	3.89%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-7.743e-02	1.0000	55.0	6.85%	3835.2	8.16%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-7.487e-02	1.0000	77.0	9.59%	5229.5	11.13%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-7.440e-02	1.0000	9.0	1.12%	800.0	1.70%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-7.382e-02	1.0000	3.0	0.37%	339.5	0.72%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-7.046e-02	1.0000	42.0	5.23%	3024.2	6.44%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-7.016e-02	1.0000	3.0	0.37%	343.8	0.73%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-6.912e-02	1.0000	22.0	2.74%	1712.6	3.64%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-6.906e-02	1.0000	11.0	1.37%	952.0	2.03%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-6.705e-02	1.0000	190.0	23.66%	12184.0	25.93%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-6.541e-02	1.0000	89.0	11.08%	6015.1	12.80%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-6.128e-02	1.0000	49.0	6.10%	3505.6	7.46%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-5.994e-02	1.0000	132.0	16.44%	8697.8	18.51%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-5.958e-02	1.0000	62.0	7.72%	4342.2	9.24%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-5.868e-02	1.0000	68.0	8.47%	4726.8	10.06%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-5.745e-02	1.0000	92.0	11.46%	6238.0	13.28%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-5.728e-02	1.0000	134.0	16.69%	8834.7	18.80%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-5.388e-02	1.0000	34.0	4.23%	2555.1	5.44%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-5.276e-02	1.0000	4.0	0.50%	450.8	0.96%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-5.276e-02	1.0000	4.0	0.50%	450.8	0.96%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.161e-02	1.0000	141.0	17.56%	9296.9	19.78%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-4.900e-02	1.0000	110.0	13.70%	7403.0	15.75%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-4.722e-02	1.0000	13.0	1.62%	1143.7	2.43%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-4.705e-02	1.0000	79.0	9.84%	5476.7	11.65%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-4.645e-02	1.0000	117.0	14.57%	7851.2	16.71%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-4.633e-02	1.0000	4.0	0.50%	461.6	0.98%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-4.612e-02	1.0000	13.0	1.62%	1146.3	2.44%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-4.533e-02	1.0000	107.0	13.33%	7238.4	15.40%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-4.135e-02	1.0000	307.0	38.23%	19356.2	41.19%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-4.133e-02	1.0000	11.0	1.37%	1014.7	2.16%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-4.014e-02	1.0000	296.0	36.86%	18715.8	39.83%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.987e-02	1.0000	7.0	0.87%	716.7	1.53%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-3.811e-02	1.0000	46.0	5.73%	3410.9	7.26%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-3.455e-02	1.0000	123.0	15.32%	8308.7	17.68%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.399e-02	1.0000	5.0	0.62%	571.7	1.22%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-3.240e-02	1.0000	69.0	8.59%	4931.7	10.50%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-3.194e-02	1.0000	72.0	8.97%	5126.3	10.91%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-3.095e-02	1.0000	28.0	3.49%	2249.5	4.79%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-2.661e-02	1.0000	118.0	14.69%	8070.9	17.18%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.654e-02	1.0000	311.0	38.73%	19753.9	42.04%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.634e-02	1.0000	7.0	0.87%	757.2	1.61%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.217e-02	1.0000	114.0	14.20%	7869.9	16.75%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.206e-02	1.0000	8.0	1.00%	854.2	1.82%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.040e-02	1.0000	110.0	13.70%	7640.8	16.26%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.904e-02	1.0000	73.0	9.09%	5307.4	11.29%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-1.860e-02	1.0000	12.0	1.49%	1181.9	2.52%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-1.800e-02	1.0000	57.0	7.10%	4280.7	9.11%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.594e-02	1.0000	3.0	0.37%	456.7	0.97%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-1.482e-02	1.0000	70.0	8.72%	5168.0	11.00%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.301e-02	1.0000	14.0	1.74%	1373.2	2.92%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.184e-02	1.0000	7.0	0.87%	833.3	1.77%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.084e-02	1.0000	44.0	5.48%	3510.2	7.47%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-9.744e-03	1.0000	257.0	32.00%	16856.7	35.87%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-9.439e-03	1.0000	191.0	23.79%	12865.0	27.38%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-8.437e-03	1.0000	33.0	4.11%	2797.1	5.95%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-7.842e-03	1.0000	3.0	0.37%	508.7	1.08%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-7.095e-03	1.0000	169.0	21.05%	11588.8	24.66%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-6.979e-03	1.0000	35.0	4.36%	2966.0	6.31%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-6.270e-03	1.0000	60.0	7.47%	4679.4	9.96%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-5.830e-03	1.0000	54.0	6.72%	4291.8	9.13%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-5.813e-03	1.0000	369.0	45.95%	23657.0	50.34%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-5.809e-03	1.0000	66.0	8.22%	5091.3	10.83%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-4.008e-03	1.0000	102.0	12.70%	7509.6	15.98%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-3.719e-03	1.0000	25.0	3.11%	2342.7	4.99%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-3.400e-03	1.0000	7.0	0.87%	945.7	2.01%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-3.300e-03	1.0000	4.0	0.50%	671.3	1.43%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-3.285e-03	1.0000	7.0	0.87%	948.5	2.02%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-3.270e-03	1.0000	62.0	7.72%	4929.5	10.49%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-3.178e-03	1.0000	12.0	1.49%	1370.3	2.92%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-2.677e-03	1.0000	64.0	7.97%	5098.6	10.85%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-1.961e-03	1.0000	168.0	20.92%	11841.4	25.20%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-1.617e-03	1.0000	41.0	5.11%	3602.4	7.67%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.351e-03	1.0000	53.0	6.60%	4464.3	9.50%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-1.063e-03	1.0000	174.0	21.67%	12354.5	26.29%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-7.360e-04	1.0000	76.0	9.46%	6124.9	13.03%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.730e-04	1.0000	31.0	3.86%	3165.2	6.74%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-1.030e-04	1.0000	176.0	21.92%	12960.8	27.58%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-9.500e-05	1.0000	43.0	5.35%	4127.9	8.78%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	31.7	0.07%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	14.5	0.03%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	28.9	0.06%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	62.3	0.13%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	141.6	0.30%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	107.6	0.23%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	21.9	0.05%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	51.4	0.11%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	111.5	0.24%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	19.9	0.04%