Information for 6-GTWGACCHAG (Motif 12)

A T C G C A G T C G A T A C T G T G C A A G T C G T A C G A T C C T G A T C A G
Reverse Opposite:
A G T C G A C T C T A G C A T G C T A G A C G T G T A C C G T A G T C A T A G C
p-value:1e-9
log p-value:-2.229e+01
Information Content per bp:1.657
Number of Target Sequences with motif68.0
Percentage of Target Sequences with motif5.29%
Number of Background Sequences with motif1085.2
Percentage of Background Sequences with motif2.24%
Average Position of motif in Targets93.7 +/- 58.8bp
Average Position of motif in Background100.1 +/- 57.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GTWGACCHAG-----
-TTGACCTANTTATN
 A T C G C A G T C G A T A C T G T G C A A G T C G T A C G A T C C T G A T C A G A C G T A C G T A C G T A C G T A C G T
A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GTWGACCHAG--
--TGACCTARTT
 A T C G C A G T C G A T A C T G T G C A A G T C G T A C G A T C C T G A T C A G A C G T A C G T
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GTWGACCHAG--
--TGACCTARTT
 A T C G C A G T C G A T A C T G T G C A A G T C G T A C G A T C C T G A T C A G A C G T A C G T
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer

Match Rank:4
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GTWGACCHAG---
-BTGACCTAVTTW
 A T C G C A G T C G A T A C T G T G C A A G T C G T A C G A T C C T G A T C A G A C G T A C G T A C G T
A C G T A G T C A C G T T C A G T C G A A G T C A G T C A G C T C T G A T C A G C G A T G C A T G C A T

RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer

Match Rank:5
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GTWGACCHAG---
NNHYTGACCTAGWTT
 A C G T A C G T A T C G C A G T C G A T A C T G T G C A A G T C G T A C G A T C C T G A T C A G A C G T A C G T A C G T
A C G T G A T C G A C T G A T C A C G T A C T G T C G A A G T C A G T C A G C T C T G A T C A G C G A T C G A T G C A T

RORC/MA1151.1/Jaspar

Match Rank:6
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GTWGACCHAG----
--TGACCTANTTAN
 A T C G C A G T C G A T A C T G T G C A A G T C G T A C G A T C C T G A T C A G A C G T A C G T A C G T A C G T
A C G T A C G T G A C T T C A G T G C A G A T C G T A C A G C T T G C A T A G C G C A T C G A T G C T A G A C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GTWGACCHAG
--TGACCT--
 A T C G C A G T C G A T A C T G T G C A A G T C G T A C G A T C C T G A T C A G
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GTWGACCHAG--
--TGACCTTGAT
 A T C G C A G T C G A T A C T G T G C A A G T C G T A C G A T C C T G A T C A G A C G T A C G T
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:9
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GTWGACCHAG-
BSNTGTTTACWYWGN
 A C G T A C G T A C G T A C G T A T C G C A G T C G A T A C T G T G C A A G T C G T A C G A T C C T G A T C A G A C G T
A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G

RORB/MA1150.1/Jaspar

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GTWGACCHAG--
-NTGACCTAATT
 A T C G C A G T C G A T A C T G T G C A A G T C G T A C G A T C C T G A T C A G A C G T A C G T
A C G T C T A G G A C T C T A G T C G A G A T C T G A C G A C T T G C A G C T A C G A T G C A T