Information for 3-TAATTTGGTAAC (Motif 2)

A C G T G T C A C G T A A C G T C G A T A C G T C T A G C T A G A C G T C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T C G T A G A T C G A T C C G T A C G T A C G T A A C G T A C G T C G T A
p-value:1e-13
log p-value:-3.013e+01
Information Content per bp:1.877
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif22.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets126.9 +/- 47.2bp
Average Position of motif in Background95.3 +/- 51.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Phox2b/MA0681.1/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:TAATTTGGTAAC
TAATTAAATTA-
 A C G T G T C A C G T A A C G T C G A T A C G T C T A G C T A G A C G T C G T A C G T A A G T C
G C A T C G T A C T G A A G C T A G C T C T G A T C G A C T G A A G C T G A C T C G T A A C G T

PHOX2A/MA0713.1/Jaspar

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TAATTTGGTAAC
TAATTAAATTA-
 A C G T G T C A C G T A A C G T C G A T A C G T C T A G C T A G A C G T C G T A C G T A A G T C
G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A A C G T

PROP1/MA0715.1/Jaspar

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TAATTTGGTAAC
TAATTAAATTA-
 A C G T G T C A C G T A A C G T C G A T A C G T C T A G C T A G A C G T C G T A C G T A A G T C
G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A A C G T

Dlx1/MA0879.1/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TAATTTGGTAAC
NNTAATTANN----
 A C G T A C G T A C G T G T C A C G T A A C G T C G A T A C G T C T A G C T A G A C G T C G T A C G T A A G T C
T A C G T G C A C G A T T G C A G C T A C G A T A C G T C T G A A C T G A C T G A C G T A C G T A C G T A C G T

PH0143.1_Pou2f1/Jaspar

Match Rank:5
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------TAATTTGGTAAC
ATATATTAATTAAGTA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A C G T A A C G T C G A T A C G T C T A G C T A G A C G T C G T A C G T A A G T C
C T G A G A C T C T A G G C A T C T G A G C A T G C A T G T C A C G T A C G A T A C G T G C T A C T G A A C T G G C A T C G T A A C G T A C G T

NOTO/MA0710.1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TAATTTGGTAAC
NNTAATTAGN----
 A C G T A C G T A C G T G T C A C G T A A C G T C G A T A C G T C T A G C T A G A C G T C G T A C G T A A G T C
T A C G A G T C G A C T G T C A C G T A A C G T C A G T C G T A C T A G A T G C A C G T A C G T A C G T A C G T

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-TAATTTGGTAAC
YTAATYNRATTA-
 A C G T A C G T G T C A C G T A A C G T C G A T A C G T C T A G C T A G A C G T C G T A C G T A A G T C
G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A A C G T

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TAATTTGGTAAC
TAATTNVATTAN
 A C G T G T C A C G T A A C G T C G A T A C G T C T A G C T A G A C G T C G T A C G T A A G T C
G C A T C T G A C G T A A G C T A C G T G T A C T C G A C T G A A C G T G A C T C G T A C A T G

Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TAATTTGGTAAC
TTAATTNAATTA-
 A C G T A C G T G T C A C G T A A C G T C G A T A C G T C T A G C T A G A C G T C G T A C G T A A G T C
C G A T A C G T C G T A C G T A A C G T A G C T T G C A C T G A C G T A A C G T A C G T C G T A A C G T

SHOX/MA0630.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TAATTTGGTAAC
TTAATTGG-----
 A C G T A C G T G T C A C G T A A C G T C G A T A C G T C T A G C T A G A C G T C G T A C G T A A G T C
G A C T G C A T T C G A C T G A A C G T C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T